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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD56865.1
DDBJ      :             putative sigma factor
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  107/915 : Eukaryota  1/199 : Viruses  0/175   --->[See Alignment]
a.177.1a.4.1a.4.13
:207 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   40->198 2q1zA PDBj 3e-09 25.2 %
:RPS:PDB   20->202 3dxjF PDBj 7e-15 9.3 %
:RPS:SCOP  17->103 1iw7F3  a.177.1.1 * 2e-10 12.6 %
:RPS:SCOP  142->202 1k78A1  a.4.1.5 * 6e-07 16.4 %
:HMM:SCOP  21->133 1or7A2 a.177.1.1 * 3.3e-17 27.9 %
:HMM:SCOP  137->204 1or7A1 a.4.13.2 * 1.1e-11 32.4 %
:RPS:PFM   55->88 PF04542 * Sigma70_r2 8e-04 44.1 %
:HMM:PFM   146->198 PF08281 * Sigma70_r4_2 4e-14 32.1 53/54  
:HMM:PFM   48->114 PF04542 * Sigma70_r2 7e-13 28.4 67/71  
:BLT:SWISS 22->205 SIGK_MYCUA 5e-33 41.3 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD56865.1 GT:GENE BAD56865.1 GT:PRODUCT putative sigma factor GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 2200327..2200950 GB:FROM 2200327 GB:TO 2200950 GB:DIRECTION + GB:PRODUCT putative sigma factor GB:PROTEIN_ID BAD56865.1 LENGTH 207 SQ:AASEQ MPDECEPENNTGAVATRAPGRPLGEGPDLAALLSQIAAGDREAFTQFYRATNVRVFRTALRVLRGHAAAEETTQEVFLQVWSIADRYDRRLCSPVGWLMMLTHRRAVDRVRAEAAAGIRESTYGATSSSAAYDVVAEAAVQRLERLEVARYLRGLSAVQREAIALAYYGGCTYREVAAHLDVPLPTVKTRIRSGLQQLEASLRAAAN GT:EXON 1|1-207:0| BL:SWS:NREP 1 BL:SWS:REP 22->205|SIGK_MYCUA|5e-33|41.3|184/187| SEG 104->116|rravdrvraeaaa| SEG 121->132|stygatsssaay| BL:PDB:NREP 1 BL:PDB:REP 40->198|2q1zA|3e-09|25.2|155/176| RP:PDB:NREP 1 RP:PDB:REP 20->202|3dxjF|7e-15|9.3|183/349| RP:PFM:NREP 1 RP:PFM:REP 55->88|PF04542|8e-04|44.1|34/70|Sigma70_r2| HM:PFM:NREP 2 HM:PFM:REP 146->198|PF08281|4e-14|32.1|53/54|Sigma70_r4_2| HM:PFM:REP 48->114|PF04542|7e-13|28.4|67/71|Sigma70_r2| GO:PFM:NREP 5 GO:PFM GO:0003677|"GO:DNA binding"|PF04542|IPR007627| GO:PFM GO:0003700|"GO:transcription factor activity"|PF04542|IPR007627| GO:PFM GO:0006352|"GO:transcription initiation"|PF04542|IPR007627| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF04542|IPR007627| GO:PFM GO:0016987|"GO:sigma factor activity"|PF04542|IPR007627| RP:SCP:NREP 2 RP:SCP:REP 17->103|1iw7F3|2e-10|12.6|87/184|a.177.1.1| RP:SCP:REP 142->202|1k78A1|6e-07|16.4|61/63|a.4.1.5| HM:SCP:REP 21->133|1or7A2|3.3e-17|27.9|111/113|a.177.1.1|1/1|Sigma2 domain of RNA polymerase sigma factors| HM:SCP:REP 137->204|1or7A1|1.1e-11|32.4|68/68|a.4.13.2|1/1|Sigma3 and sigma4 domains of RNA polymerase sigma factors| OP:NHOMO 134 OP:NHOMOORG 108 OP:PATTERN -------------------------------------------------------------------- 1---31-----1-----11-11--1-11111111113122-1-111---111121--1----1----121------------1----------------------1-1----------------------------11111----2------------------1--------------------------1------------------1------------1--------1---------------------------------------------------------------------------------------------------------------------------------------------------------133311132322---------------------1---112--1--1--11----1---1--1---------1-------------------------------------2-1-------------1----111-------11-1--1--22--1---11----------1-----------------------------------------------------------------------------1-1---1--------------------------1-----------------------------------------------------------------------------1--------------1-----------111--------------------------------1111--11----------------------------------------------------------------------------------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1--------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 185 STR:RPRED 89.4 SQ:SECSTR ###################HHHHHTccHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHGGGccccccHHHHHHHHHHHHHHHHHcccTccHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHcTTccHHHHHHHHHHTcccccTTcccTTcccccGGGTccccccccHHHHHcc### DISOP:02AL 1-28, 204-207| PSIPRED ccccccccccccccccccccccccccHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccHHccccccccccccHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHcccHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHcccc //