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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD56870.1
DDBJ      :             putative thiamin biosynthesis protein
Swiss-Prot:THII_NOCFA   RecName: Full=Probable thiamine biosynthesis protein thiI;

Homologs  Archaea  62/68 : Bacteria  365/915 : Eukaryota  2/199 : Viruses  0/175   --->[See Alignment]
c.26.2d.308.1
:410 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   6->340 2c5sA PDBj 1e-31 29.9 %
:RPS:PDB   28->347 2c5sA PDBj 3e-42 33.8 %
:RPS:SCOP  6->175 2c5sA2  d.308.1.1 * 6e-36 26.5 %
:RPS:SCOP  176->356 2c5sA1  c.26.2.6 * 1e-20 40.9 %
:HMM:SCOP  3->175 2c5sA2 d.308.1.1 * 2.4e-44 36.9 %
:HMM:SCOP  176->393 2c5sA1 c.26.2.6 * 2.5e-44 33.3 %
:RPS:PFM   108->166 PF02926 * THUMP 1e-04 35.6 %
:RPS:PFM   177->353 PF02568 * ThiI 2e-38 48.3 %
:HMM:PFM   178->370 PF02568 * ThiI 1.6e-59 44.5 191/197  
:HMM:PFM   74->167 PF02926 * THUMP 1.9e-16 31.1 90/93  
:BLT:SWISS 1->410 THII_NOCFA 0.0 100.0 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD56870.1 GT:GENE BAD56870.1 GT:PRODUCT putative thiamin biosynthesis protein GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 2205525..2206757 GB:FROM 2205525 GB:TO 2206757 GB:DIRECTION + GB:PRODUCT putative thiamin biosynthesis protein GB:PROTEIN_ID BAD56870.1 LENGTH 410 SQ:AASEQ MSGFCVLAKYGEIAVKGRNQGWFENCLVRNLRHAVGGPVLIRRRGGFLVASAHHRDPAELTRRLQEVMGLNVVQPALSVPPTVEDATAAAVDLLRRRHAERPGAPVPTFAVRARRRWKDFPMSSDAFAAHIGARVCAELGWRVDLAAPEVPVLVEVDRREIFVSVERLPGQGGLPVGCSGRALVLLSGGYDSPVAAYRAMRRGLHCDFVHFTGAPYTDPSSMYKAYALARELGRYQTPARLYVVPVGNAQKTLATAGAEELQIVARRRLYLRIAEELARRRQRDALVTGDSLGQVASQTLSNLVSADQACTLPVLRPLIGWDKQEIITEARRIGTAEISVLRDEDCCSLLAPSEVATRTNPADLRVIEQRADIDTLVEQALEHVTVLTPGRVRGAEPPRAKVARPTVVAG GT:EXON 1|1-410:0| SW:ID THII_NOCFA SW:DE RecName: Full=Probable thiamine biosynthesis protein thiI; SW:GN Name=thiI; OrderedLocusNames=NFA_20240; SW:KW Complete proteome; Cytoplasm; RNA-binding; Thiamine biosynthesis. SW:EXACT T SW:FUNC + BL:SWS:NREP 1 BL:SWS:REP 1->410|THII_NOCFA|0.0|100.0|410/410| GO:SWS:NREP 3 GO:SWS GO:0005737|"GO:cytoplasm"|Cytoplasm| GO:SWS GO:0003723|"GO:RNA binding"|RNA-binding| GO:SWS GO:0009228|"GO:thiamin biosynthetic process"|Thiamine biosynthesis| BL:PDB:NREP 1 BL:PDB:REP 6->340|2c5sA|1e-31|29.9|321/372| RP:PDB:NREP 1 RP:PDB:REP 28->347|2c5sA|3e-42|33.8|314/372| RP:PFM:NREP 2 RP:PFM:REP 108->166|PF02926|1e-04|35.6|59/94|THUMP| RP:PFM:REP 177->353|PF02568|2e-38|48.3|176/196|ThiI| HM:PFM:NREP 2 HM:PFM:REP 178->370|PF02568|1.6e-59|44.5|191/197|ThiI| HM:PFM:REP 74->167|PF02926|1.9e-16|31.1|90/93|THUMP| GO:PFM:NREP 3 GO:PFM GO:0003723|"GO:RNA binding"|PF02568|IPR020536| GO:PFM GO:0005737|"GO:cytoplasm"|PF02568|IPR020536| GO:PFM GO:0009228|"GO:thiamin biosynthetic process"|PF02568|IPR020536| RP:SCP:NREP 2 RP:SCP:REP 6->175|2c5sA2|6e-36|26.5|162/168|d.308.1.1| RP:SCP:REP 176->356|2c5sA1|1e-20|40.9|181/204|c.26.2.6| HM:SCP:REP 3->175|2c5sA2|2.4e-44|36.9|168/0|d.308.1.1|1/1|THUMP domain-like| HM:SCP:REP 176->393|2c5sA1|2.5e-44|33.3|213/0|c.26.2.6|1/1|Adenine nucleotide alpha hydrolases-like| OP:NHOMO 446 OP:NHOMOORG 429 OP:PATTERN 111-11-111111111111111111111-1-11111111111122112111112232223311111-- ---------------11-------------------1----------------------------1----1-------11111--------------------------------------------------------------1----------------------------------------11---11111111111111111111111111111111--111111111111111111111111111111111111111111111111---1-11111111111111111111111111111111111111111111111111---------11111-1111-111-11--------11-11111--1--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1-----------------------1--111-1111-111111111111111111111----1--------1111111111111-111-1111111111111111111111111111111111111111111111111111-11111111111111--11111------11111111111-111111----------1111111111111111111---------111111111111111--------------------------------111111-1-111-111---11111111111-111-111--- --------21--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 396 STR:RPRED 96.6 SQ:SECSTR #####EEEEEcccTcccHHHHHHHHHHHHHHTTTcTTcEEEEccccEEEEccTTccHHHHHHHHTTcTTEEEEEEEEEEEccHHHHHHHHHHHHHTcccccccccccEEEEEEEEccTTccccHHHHHHHHHHHHHTTcccEEccccccEEEEEEEcccEEEEEEEEEEccccccTTTTEEEEEEcccccHHHHHHHHHHHcTEEEEEEEEEcTTTccHHHHHHHHHHHHHHGGGcccEEEEEEEcHHHHHHHHHHccGGGHHHHHHHHHHHHHHHHHHHTTccEEEcccccccTTcccHHHHHHHGGGccccEEcTTTTccHHHHHHHHHHTTcHHHHTccccccHHHHHHHHHcccTTcHHHHHHHHcccHHHHHHHHHHHHccTTcccccccccGGGc######### DISOP:02AL 410-411| PSIPRED ccccEEEEEEcccccccccHHHHHHHHHHHHHHHHccccEEEEEccEEEEEcccccHHHHHHHHcccccEEEEEEEEEEcccHHHHHHHHHHHHHHHHHccccccccEEEEEEEEccccccccHHHHHHHHHHHHHHHcccEEEcccccEEEEEEEEccEEEEEEEEEcccccccccccccEEEEEEccccHHHHHHHHHHcccEEEEEEEcccccccHHHHHHHHHHHHHHHHcccccEEEEEEcHHHHHHHHHccccccEEEEEHHHHHHHHHHHHHHccccEEEEcccccccccccHHHHHHHHHHcccEEEccHHcccHHHHHHHHHHcccHHHHccccccccEEEEccccEEcccHHHHHHHHHHccHHHHHHHHHcccEEEEcccEEccccccccccccccccc //