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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD56872.1
DDBJ      :             putative transcriptional regulator
Swiss-Prot:             

Homologs  Archaea  2/68 : Bacteria  311/915 : Eukaryota  4/199 : Viruses  0/175   --->[See Alignment]
a.4.5c.67.1
:442 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   4->71 1v4rA PDBj 8e-08 38.2 %
:BLT:PDB   141->301 1x0mA PDBj 7e-10 35.6 %
:RPS:PDB   2->72 3by6D PDBj 3e-16 29.6 %
:RPS:PDB   148->430 2egyB PDBj 2e-17 19.1 %
:RPS:SCOP  2->70 1e2xA1  a.4.5.6 * 2e-17 26.1 %
:RPS:SCOP  146->439 1vp4A  c.67.1.1 * 5e-18 16.0 %
:HMM:SCOP  1->99 1v4rA1 a.4.5.6 * 1.7e-17 36.6 %
:HMM:SCOP  60->439 1wstA1 c.67.1.1 * 1.6e-72 33.3 %
:RPS:PFM   7->66 PF00392 * GntR 8e-08 43.3 %
:RPS:PFM   141->433 PF00155 * Aminotran_1_2 2e-12 28.6 %
:HMM:PFM   100->431 PF00155 * Aminotran_1_2 8.6e-30 25.2 325/363  
:HMM:PFM   4->66 PF00392 * GntR 2.3e-18 44.4 63/64  
:BLT:SWISS 4->426 Y3073_RHOS4 8e-30 31.2 %
:PROS 153->163|PS00626|RCC1_2
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD56872.1 GT:GENE BAD56872.1 GT:PRODUCT putative transcriptional regulator GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(2207749..2209077) GB:FROM 2207749 GB:TO 2209077 GB:DIRECTION - GB:PRODUCT putative transcriptional regulator GB:PROTEIN_ID BAD56872.1 LENGTH 442 SQ:AASEQ MPSYRSVADLIAEQITAGRWAPGDRLPTHRQLAAEFGIAIATATRAYAELKRTGVVVGEPGRGTFVRDRSVRLVSPEYGPGADTVWADLSITQPFSRRRSELLRAALRELATAGELDAVLRRPPPGGRPHERRAAAGYPARLGIEAEAERVFLTSGAQHGLDLVLRATLAPGDAVAVDELTYPGFRMLAEAQRLDLVPIPADGDGPDLTALAQACARRRLRAVYTMPTLHNPLGWVLNAAARAELIALAREHDLLLIEDAAYAFLADPAPPPLAALAPERTFWVSSISKSVSAGLRFGLLVTPASARNALSGIVRTTMAGPSSLVTALVVRWLSDGTLADLEAASRAAAAEHQRILRRELDGRPMRAHPRSYFAWLPVDPGQRMDRVAAELSRRGIRVSTADLFATTPHVPHGLRLAVGSLSPRDLPNALAVVRDVLDDIPL GT:EXON 1|1-442:0| BL:SWS:NREP 1 BL:SWS:REP 4->426|Y3073_RHOS4|8e-30|31.2|416/456| PROS 153->163|PS00626|RCC1_2|PDOC00544| SEG 97->116|rrrsellraalrelatagel| SEG 121->137|rrpppggrpherraaag| SEG 208->222|ltalaqacarrrlra| SEG 239->251|aaaraelialare| SEG 260->278|aayafladpappplaalap| SEG 339->350|adleaasraaaa| BL:PDB:NREP 2 BL:PDB:REP 4->71|1v4rA|8e-08|38.2|68/100| BL:PDB:REP 141->301|1x0mA|7e-10|35.6|160/403| RP:PDB:NREP 2 RP:PDB:REP 2->72|3by6D|3e-16|29.6|71/121| RP:PDB:REP 148->430|2egyB|2e-17|19.1|283/394| RP:PFM:NREP 2 RP:PFM:REP 7->66|PF00392|8e-08|43.3|60/64|GntR| RP:PFM:REP 141->433|PF00155|2e-12|28.6|287/341|Aminotran_1_2| HM:PFM:NREP 2 HM:PFM:REP 100->431|PF00155|8.6e-30|25.2|325/363|Aminotran_1_2| HM:PFM:REP 4->66|PF00392|2.3e-18|44.4|63/64|GntR| GO:PFM:NREP 6 GO:PFM GO:0003700|"GO:transcription factor activity"|PF00392|IPR000524| GO:PFM GO:0005622|"GO:intracellular"|PF00392|IPR000524| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF00392|IPR000524| GO:PFM GO:0009058|"GO:biosynthetic process"|PF00155|IPR004839| GO:PFM GO:0016769|"GO:transferase activity, transferring nitrogenous groups"|PF00155|IPR004839| GO:PFM GO:0030170|"GO:pyridoxal phosphate binding"|PF00155|IPR004839| RP:SCP:NREP 2 RP:SCP:REP 2->70|1e2xA1|2e-17|26.1|69/73|a.4.5.6| RP:SCP:REP 146->439|1vp4A|5e-18|16.0|294/420|c.67.1.1| HM:SCP:REP 1->99|1v4rA1|1.7e-17|36.6|93/0|a.4.5.6|1/1|"Winged helix" DNA-binding domain| HM:SCP:REP 60->439|1wstA1|1.6e-72|33.3|378/0|c.67.1.1|1/1|PLP-dependent transferases| OP:NHOMO 635 OP:NHOMOORG 317 OP:PATTERN ----------------------1-----------------------1--------------------- 1-1-1---------1---------1-----------1111-11--1--1--1--11------2-222-112-----11---1-----------------------1--------------------------------------22-------------------------------------1----------22323433-333443-1--122331--3---11111143---------------1----1-11111----111111----11--1---1----11-----------1111-1111111------------1-1-222121211--211--11--1--1-------1-----2--1-------211-------2322---11-2-22222222124-22326634142-34433323354441----121111-1311111111233----3------------------------------1-2-12432358A7754111155891111-45855475--44123111622251-11-11-1------------1--1--1-----1221----------1--111-----------------------------1-2-1-------11-1------1------1-----1--------321-11------------------------------223-----11222121111212211---------1--------------------------131---------------1111111-1-2-32223434234231-------------1--2--------1123--------------1------------------------------------------------------1- --------------------------------------------------------------------------------------------------------------------------------------------------------------1--------------1--------------2-----2---- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 382 STR:RPRED 86.4 SQ:SECSTR HcHHHHHHHHHHHHHHTTcccTTcEEccHHHHHHHHTccHHHHHHHHHHHHHTTcEEEETTTEEEEcccHHHHHccccc##########################################################HHHHHcccccGGGEEEEccHHHHHHHHHHHHccTTcEEEEEEcccHHHHHHHHTTccEEEEEEEETTEEcHHHHHHHHHHcccccEEEcccccTTTcccccHHHHHHHHHHHHTTTccEEEEcccccccccHHHHHHTTTcccEEEEEEcTTTTccTTccEEEEccHHHHHHHHHHHHHHHccccHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHccTTcEEcccEEEEEccTTccHHHHHHHHHHTTEEcEEcGGGcTTcccTTEEEEEcccccHHHHHHHHHHHGGGcHHH## DISOP:02AL 72-85| PSIPRED ccHHHHHHHHHHHHHHccccccccccccHHHHHHHHcccHHHHHHHHHHHHHcccEEEccccccEEEcccHHHccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHcccccccccEEEEccHHHHHHHHHHHHHccccEEEEEcccHHHHHHHHHHcccEEEEEccccccccHHHHHHHHHccccEEEEEcccccccccccccHHHHHHHHHHHHHcccEEEEEcccHHHccccccccHHHccccEEEEcccHHHHHHHHHHEEEEccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHccccEEcccccEEEEEEccccccHHHHHHHHHHcccEEEEccccccccccccEEEEEEccccHHHHHHHHHHHHHHHHcccc //