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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD56877.1
DDBJ      :             hypothetical protein
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  8/915 : Eukaryota  10/199 : Viruses  0/175   --->[See Alignment]
d.92.1
:270 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   58->172 1astA PDBj 3e-04 33.3 %
:RPS:PDB   60->187 3ba0A PDBj 2e-09 19.8 %
:RPS:SCOP  60->172 1astA  d.92.1.8 * 9e-06 28.3 %
:HMM:SCOP  10->254 1kapP2 d.92.1.6 * 1.5e-23 22.9 %
:RPS:PFM   59->241 PF01400 * Astacin 1e-05 33.3 %
:HMM:PFM   73->224 PF01400 * Astacin 1.5e-09 21.2 132/191  
:BLT:SWISS 80->172 NAS27_CAEEL 3e-07 34.9 %
:BLT:SWISS 153->223 TLD_DROME 9e-05 48.3 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD56877.1 GT:GENE BAD56877.1 GT:PRODUCT hypothetical protein GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 2212777..2213589 GB:FROM 2212777 GB:TO 2213589 GB:DIRECTION + GB:PRODUCT hypothetical protein GB:PROTEIN_ID BAD56877.1 LENGTH 270 SQ:AASEQ MNTLAICSPKRLPDDKQIESARLAVEINPANMPYVRPIAGLVGERPVNREFISAMTTKYWRSGGVHLGVRFLDTTDRALQDRILAHMNAWSPGANIGFHRSTAPDAEIRIARTPGDGYWSYLGTDVLQIPADEPTMNLDSFGLDTDEREYTRVVRHETGHTLGFPHEHLRRDVVHRIDPAKAIRYFRDRVGWSEATTRAQVLTPLEEVALITTPTDTQSIMCYQLPGSIMRDGRPVPGGLDINDRDRGFVHVLYPTAVATTPIQALAGVH GT:EXON 1|1-270:0| BL:SWS:NREP 2 BL:SWS:REP 80->172|NAS27_CAEEL|3e-07|34.9|83/428| BL:SWS:REP 153->223|TLD_DROME|9e-05|48.3|58/1067| BL:PDB:NREP 1 BL:PDB:REP 58->172|1astA|3e-04|33.3|102/200| RP:PDB:NREP 1 RP:PDB:REP 60->187|3ba0A|2e-09|19.8|126/365| RP:PFM:NREP 1 RP:PFM:REP 59->241|PF01400|1e-05|33.3|159/185|Astacin| HM:PFM:NREP 1 HM:PFM:REP 73->224|PF01400|1.5e-09|21.2|132/191|Astacin| GO:PFM:NREP 2 GO:PFM GO:0004222|"GO:metalloendopeptidase activity"|PF01400|IPR001506| GO:PFM GO:0006508|"GO:proteolysis"|PF01400|IPR001506| RP:SCP:NREP 1 RP:SCP:REP 60->172|1astA|9e-06|28.3|99/200|d.92.1.8| HM:SCP:REP 10->254|1kapP2|1.5e-23|22.9|214/246|d.92.1.6|1/1|Metalloproteases ("zincins"), catalytic domain| OP:NHOMO 28 OP:NHOMOORG 18 OP:PATTERN -------------------------------------------------------------------- ------------------------------------1---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1-------------------------------1-------------------------------------------------------------------1----------------------------------------------------------------------------------------------------------------------------------------------------------------------1-2-------1-1------------------------------------------------------------------------------------------------- -----------------------1-1--------------------1---122-21---------------------------------------6------2------------------------------------------------------------------------------------------------ ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 205 STR:RPRED 75.9 SQ:SECSTR ########################################cccccccTTcccTTcccccccccEEcEEEEEcccccHHHHHHHHHHHHHHHTTccccEEEcccccccEEEEEEcccccccccccccccccEcEEEETTccEEcccccEEccHHHHHHHHHHHTccccccTTTTTcccccccccccccccccccHHHHHHGccccGGGcccTTccccTTcTTcTTTTcccTTcccEEEcccccccc######################### DISOP:02AL 16-53| PSIPRED ccHHHHcccccccccccHHHHHHHcccccccccccccccccccccccccHHEEcccccccccccEEEEEEEcccccHHHHHHHHHHHHHHHHcccEEEEEccccccEEEEEEEcccccccEEccccccccccccccccccccccccccccHHHHHHHHHHHHcccccccccccccccHHHHHHHHHcccccccHHHHHHHHccccccccccccccccccEEcccccccccccccccccccEEcHHHHHHHHHHcccccccccHHHHcccc //