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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD56883.1
DDBJ      :             putative DNA-binding protein
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  73/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
a.35.1
:347 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:RPS:PDB   119->177 2axuC PDBj 5e-13 23.2 %
:RPS:PDB   199->295 2cwdB PDBj 2e-04 15.2 %
:RPS:SCOP  119->188 1b0nA2  a.35.1.3 * 3e-12 26.9 %
:HMM:SCOP  114->183 2bnmA1 a.35.1.3 * 4.9e-10 32.9 %
:HMM:PFM   123->177 PF01381 * HTH_3 1e-13 33.3 54/55  
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD56883.1 GT:GENE BAD56883.1 GT:PRODUCT putative DNA-binding protein GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(2217114..2218157) GB:FROM 2217114 GB:TO 2218157 GB:DIRECTION - GB:PRODUCT putative DNA-binding protein GB:PROTEIN_ID BAD56883.1 LENGTH 347 SQ:AASEQ MGRRAVHRRPARRRPARAGSERRWRDAPVHHATATDPSVPTAGTQVVGRAPPIGRRALPSTSRRAAALPSHRPRGALDNTRPHPVTGCTVAGGTTRQWYQPCVGGRGTIGVAAVELPTLGGFVRARRERRGMSRQELATAIHSSLGYIAKIEQGGAAGPSPAVLEALSEVYGLDADERRHLYRLSGQTPEDPPATAPAHRGTLDAFAPHPAAYRSETGDVLDANAAHDATFPGLRRHGNVLRWLFTDPRARLVHEEWEREARIAVGMLRHHAACPRDPGAVARLLGDLAEQPDFHRLWSAGIVSVARPDPHLRLRRPGTGEVFTLRTELFADTADPARQLWLGVPSS GT:EXON 1|1-347:0| SEG 3->25|rravhrrparrrparagserrwr| RP:PDB:NREP 2 RP:PDB:REP 119->177|2axuC|5e-13|23.2|56/295| RP:PDB:REP 199->295|2cwdB|2e-04|15.2|92/151| HM:PFM:NREP 1 HM:PFM:REP 123->177|PF01381|1e-13|33.3|54/55|HTH_3| RP:SCP:NREP 1 RP:SCP:REP 119->188|1b0nA2|3e-12|26.9|67/68|a.35.1.3| HM:SCP:REP 114->183|2bnmA1|4.9e-10|32.9|70/0|a.35.1.3|1/1|lambda repressor-like DNA-binding domains| OP:NHOMO 156 OP:NHOMOORG 73 OP:PATTERN -------------------------------------------------------------------- ----F---112---2------1--18------33333442-224212--1--343--2--12--9-35B2--------------------------------------------------------------------------1---------------------------------------------------------------------------------------1----------------------------------------------------------------------------------------------1------------------------------------------------1--------111-----11------------------------2------11--11-----1-------------------1-1-1--------------------------------------11112-----------11-1--------1------------------------------------------------------------------------------------------------------------1-----------1------------------------------------------------------------11111-------------------1-------------------------------------1------------------------------------1--------------------------------11----------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 187 STR:RPRED 53.9 SQ:SECSTR ##################################################################################################################HHHHHHHHHHHHHHHTTccHHHHHTTTHHcHHHHHHHTTTcTccccHHHHHHHHHHHTccHHHHHHHHHHccccHHHHccccHHHHHHHHHHTTccccccccccccTTEEccccTTcTTcEEEEEEEccccGGGccccccccccEEEEEEEccEEEEEccTTccEEEEEcTTcEEEEcccEEEEEcT############################################## DISOP:02AL 1-33, 35-37, 76-78| PSIPRED ccccHHHcccHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccEEEcccccccccccccccccccHHHcccHHHHHHHHHHHHcccccHHHHHHHHcccHHHHHHHHccccccccHHHHHHHHHHHcccHHHHHHHHHHHcccccccccccHHHHHHHHHHccccEEEEccccHHHHccHHHHHHHccccccccEEEEEcccHHHHHHHccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHccHHHHHHHHHcccccccccccEEEEccccccEEEEEEEEcccccccccEEEEEEccc //