[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD56884.1
DDBJ      :             putative short chain dehydrogenase
Swiss-Prot:             

Homologs  Archaea  45/68 : Bacteria  833/915 : Eukaryota  187/199 : Viruses  0/175   --->[See Alignment]
c.2.1
:280 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   8->276 2uvdA PDBj 7e-24 33.5 %
:RPS:PDB   1->277 1dohB PDBj 2e-35 23.0 %
:RPS:SCOP  8->276 1bdbA  c.2.1.2 * 9e-33 19.9 %
:HMM:SCOP  6->276 1zemA1 c.2.1.2 * 7.7e-76 40.9 %
:RPS:PFM   11->192 PF00106 * adh_short 2e-18 39.6 %
:HMM:PFM   11->190 PF00106 * adh_short 8.2e-33 32.1 165/167  
:BLT:SWISS 8->276 LIMC_RHOER 3e-40 36.7 %
:PROS 160->188|PS00061|ADH_SHORT
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD56884.1 GT:GENE BAD56884.1 GT:PRODUCT putative short chain dehydrogenase GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 2218348..2219190 GB:FROM 2218348 GB:TO 2219190 GB:DIRECTION + GB:PRODUCT putative short chain dehydrogenase GB:PROTEIN_ID BAD56884.1 LENGTH 280 SQ:AASEQ MSDRTEPLEGKVALVTGAARGQGRAHAVRLAADGADIIAVDVCAPVSDTVTYPAPTEADLAETARLVEAAGRKVLTRVVDIRDLAALQDVVADGVAMFGRLDVLVANAGVLSWGRLWELSEDAWDTVVDVNLNGTWRTVRAVVPAMIEAGNGGSIVIVSSSAGLKATPGNGHYAAAKHGLVALTNTLALEAGEFGIRVNSIHPYSVDTPMIQPDAMMEMFGKHPAYLHAFPPVPLRQAADGKSGFMPVDQVADVVSWLAGPGSGVITGTQVPVDAGALKY GT:EXON 1|1-280:0| BL:SWS:NREP 1 BL:SWS:REP 8->276|LIMC_RHOER|3e-40|36.7|264/277| PROS 160->188|PS00061|ADH_SHORT|PDOC00060| SEG 31->44|aadgadiiavdvca| SEG 149->163|agnggsivivsssag| BL:PDB:NREP 1 BL:PDB:REP 8->276|2uvdA|7e-24|33.5|239/246| RP:PDB:NREP 1 RP:PDB:REP 1->277|1dohB|2e-35|23.0|261/271| RP:PFM:NREP 1 RP:PFM:REP 11->192|PF00106|2e-18|39.6|169/169|adh_short| HM:PFM:NREP 1 HM:PFM:REP 11->190|PF00106|8.2e-33|32.1|165/167|adh_short| GO:PFM:NREP 2 GO:PFM GO:0008152|"GO:metabolic process"|PF00106|IPR002198| GO:PFM GO:0016491|"GO:oxidoreductase activity"|PF00106|IPR002198| RP:SCP:NREP 1 RP:SCP:REP 8->276|1bdbA|9e-33|19.9|241/267|c.2.1.2| HM:SCP:REP 6->276|1zemA1|7.7e-76|40.9|257/0|c.2.1.2|1/1|NAD(P)-binding Rossmann-fold domains| OP:NHOMO 8952 OP:NHOMOORG 1065 OP:PATTERN 1-1-122565756452-412-1--7447264811---------11-42--522-12--1-21523-12 9DL2O1-333A131X*lGH-Gl33R*GFGGGNwz**Ws**4b8*CD852B72EAA62711CFO2DDMVOM81111----255S-1111343512111--53F279U6L7911111111111111342235222263CCCCD222G837AB3235533121443241998J3111111111111C7656551D5DAAAA9BCDCBCADDAE9EEBDAAB8FCDHC8444443AR5443333244444436767961715515-1-684445535476615323133321-222222222223333334434433122---2224435695554443343625523535321-7621275122225333335313919VDDM11--1E6kTR466NCMHECDDCBBDCDDL-AAGA9VAGHaP2bQQJQLSfbfbaMPAF9DDJL8GHB7D33333333IJI948B7111-1111----122211211111111115Cbf93AMJALiVXcfVDHHIFPPmeJKKJ8HtNrKkbO35GFDF5BABJBO8TR6943424631111111116J954G3731111-322313542B32735755DI23-11---------1-------2-21-4465776785B915775628A766565966471-2324611-11177B95955664555565-6556555665655545548EHG644476435565555555556I44433341-588888888888111413121766726AGC1115141111113419ABCB37276E5JKGICHKRHBDGGDFDI3121121111244A222224546798B9C894553-1-1122775444--------1-2----2-----1--------------3332154565291 11--536-1-1-477JKGFHIKBQEPO9A4666ADB4E8CBBA866DEEMDMSSGKBCCCBB254263232254522222243334-6-BQ9K7L74444535464-AB3g5C85841121272A7192HY9-9592143734B5-51-281143477DJHH6JEE976637BBD5541L1-15968AYIL53596554 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 280 STR:RPRED 100.0 SQ:SECSTR ccGGGGccTTcEEEETTTTcHHHHHHHHHHHHTTcccEEEEEHHHEEEEEEEEEcccHHHHHHHHHHHHTTccEEEEEccTTcHHHHHHHHHHHHHHHccccEEEEcccccccccGGGccHHHHHHHHHHHTHHHHHHHHHHHHHccTHTTcEEEEEccGGGTcccccccHHHHHHHHHHHHHHHHHHHHHGGGTcEEEEEEEcccccHHHHHHHGGGGcTTcTTccHHHHHHHHHHHccTTcccccHHHHHHHHHHHHcGGGTTccccEEEEccccHHH DISOP:02AL 1-4| PSIPRED cccccccccccEEEEEccccHHHHHHHHHHHHcccEEEEEEcccHHHHHHccccccHHHHHHHHHHHHHcccEEEEEEEccccHHHHHHHHHHHHHHHccEEEEEEcccccccccHHHccHHHHHHHHHHcccHHHHHHHHHHHHHHHHcccccEEEccHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHccccEEEEEcccccccHHHHHHHHHHHccccHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHccHHHcccccEEEEEccccccc //