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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD56892.1
DDBJ      :             putative dehydrogenase
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  42/915 : Eukaryota  1/199 : Viruses  0/175   --->[See Alignment]
a.100.1c.2.1
:366 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   5->331 1bg6A PDBj 2e-20 26.9 %
:RPS:PDB   1->327 3egoB PDBj 8e-06 13.6 %
:RPS:SCOP  2->182 1bg6A2  c.2.1.6 * 5e-06 22.2 %
:RPS:SCOP  188->337 1bg6A1  a.100.1.5 * 7e-26 28.4 %
:HMM:SCOP  1->181 1bg6A2 c.2.1.6 * 2.2e-19 25.0 %
:HMM:SCOP  188->361 1bg6A1 a.100.1.5 * 1.7e-49 43.7 %
:RPS:PFM   187->334 PF02317 * Octopine_DH 1e-17 44.9 %
:HMM:PFM   183->334 PF02317 * Octopine_DH 1.4e-38 36.8 144/152  
:HMM:PFM   1->107 PF01210 * NAD_Gly3P_dh_N 1.9e-10 21.2 99/159  
:BLT:SWISS 5->331 ODH_ARTSC 7e-18 26.9 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD56892.1 GT:GENE BAD56892.1 GT:PRODUCT putative dehydrogenase GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(2226112..2227212) GB:FROM 2226112 GB:TO 2227212 GB:DIRECTION - GB:PRODUCT putative dehydrogenase GB:PROTEIN_ID BAD56892.1 LENGTH 366 SQ:AASEQ MRITVIGGGHGAYAAVADMSAKGHEVVWWRRDHSAFAPLLDAGGIRVDDHRGHRVLPIGAAGGITVEPDLGRAVAGAAVVLVPIPAFSHPDLAERIAPHLTDGQVVYLPPGSFGSVIFARAVAAAGNPAKVAFAETGTLPYLARKHGDDRVVVSGYATRLPTGVLPAHDSERALAVLAEIYPVEPVEDALSGALMNAGPIIHPPLILMNAGPLQHFEAWDIHNEGTQDAIRRVTTALDAERIAIRTALGYAAPHFPLADHYTADGDEWMYGNAAHEKLTDSGDWREHIDLHTHRYMTEDVEIGLALLTSVGRWAGVPTPVASGLLAVAGAITGRSADSGGRTLAALGLDGLDRAGMTELLHDGFSR GT:EXON 1|1-366:0| BL:SWS:NREP 1 BL:SWS:REP 5->331|ODH_ARTSC|7e-18|26.9|308/359| SEG 70->82|lgravagaavvlv| SEG 119->134|aravaaagnpakvafa| SEG 339->355|ggrtlaalgldgldrag| BL:PDB:NREP 1 BL:PDB:REP 5->331|1bg6A|2e-20|26.9|308/349| RP:PDB:NREP 1 RP:PDB:REP 1->327|3egoB|8e-06|13.6|286/291| RP:PFM:NREP 1 RP:PFM:REP 187->334|PF02317|1e-17|44.9|138/153|Octopine_DH| HM:PFM:NREP 2 HM:PFM:REP 183->334|PF02317|1.4e-38|36.8|144/152|Octopine_DH| HM:PFM:REP 1->107|PF01210|1.9e-10|21.2|99/159|NAD_Gly3P_dh_N| GO:PFM:NREP 3 GO:PFM GO:0016491|"GO:oxidoreductase activity"|PF02317|IPR003421| GO:PFM GO:0050662|"GO:coenzyme binding"|PF02317|IPR003421| GO:PFM GO:0055114|"GO:oxidation reduction"|PF02317|IPR003421| RP:SCP:NREP 2 RP:SCP:REP 2->182|1bg6A2|5e-06|22.2|176/184|c.2.1.6| RP:SCP:REP 188->337|1bg6A1|7e-26|28.4|141/165|a.100.1.5| HM:SCP:REP 1->181|1bg6A2|2.2e-19|25.0|176/184|c.2.1.6|1/1|NAD(P)-binding Rossmann-fold domains| HM:SCP:REP 188->361|1bg6A1|1.7e-49|43.7|167/172|a.100.1.5|1/1|6-phosphogluconate dehydrogenase C-terminal domain-like| OP:NHOMO 45 OP:NHOMOORG 43 OP:PATTERN -------------------------------------------------------------------- ------------------------------------1--------1---------------------------------------------------------------------------------------------11-------------------------------------------------1-----------------------------------------------------------------------------1-------------------------------------------------------1--------------------------1----------1---111------------------111----------------------------1----11---------------------1-1------------------------------------------------1-------111111-----11-------11--------------------31---------------------------1------------1----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1--------------------1-----------------------------------------------------------------------1111-1------ --------------------------1---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 334 STR:RPRED 91.3 SQ:SECSTR cEEEEEcccHHHHHHHHHHHTTTcEEEEEcccHHHHHHHHHHHcEEEEETTEEEEEccEEEccccccccEEEEcHHHHHTTccccGGGHHHHHHHHHTccccEEEEcccccHHHHHHHTcccccEEEEEEEccEEEEccccEEEEEEcccEEEEEcTTccTHHHHHHHccccTTccETTEEcccHHHHHHHHHHHHHHHHHHHHHHTccTTHHHTTccccHHHHHHcHHHHHHHHHHHHHHHHHHTcccHcccTccHHHHccccHHHHHHHHHHHHHHTTTcccHHHHHHTTTccccHHHHHHHHHHHHHHHHTTcccHHHHHHHHHHHHHccT################################ DISOP:02AL 365-366| PSIPRED cEEEEEcccHHHHHHHHHHHHcccEEEEEEccHHHHHHHHHcccEEEEccccccccccccccccEEEccHHHHHccccEEEEEcccHHHHHHHHHHHHHcccccEEEEEcccccHHHHHHHHHHccccccEEEEEEccccccEEEccccEEEEEEEcccEEEccccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHccHHccHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHccHHHHHHccccccccccccccccEEEHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHccccHHHcccHHHHccccccHHHHHHHHHHcccc //