[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD56893.1
DDBJ      :             hypothetical protein
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  16/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
a.4.5d.58.4
:349 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   16->152 2znzC PDBj 2e-08 23.4 %
:RPS:PDB   15->153 2cyyA PDBj 2e-11 21.7 %
:RPS:PDB   197->283 2e1cA PDBj 7e-07 17.0 %
:RPS:SCOP  15->59 1i1gA1  a.4.5.32 * 2e-05 24.4 %
:RPS:SCOP  77->149 1ri7A2  d.58.4.2 * 4e-09 21.9 %
:RPS:SCOP  197->228 1i1gA1  a.4.5.32 * 2e-04 37.5 %
:RPS:SCOP  241->320 1i1gA2  d.58.4.2 * 1e-06 13.8 %
:HMM:SCOP  12->59 2cg4A1 a.4.5.32 * 1.8e-05 27.1 %
:HMM:SCOP  71->157 1ri7A2 d.58.4.2 * 1.1e-09 25.6 %
:HMM:SCOP  180->241 2cg4A1 a.4.5.32 * 3.8e-06 29.0 %
:HMM:SCOP  241->325 1ri7A2 d.58.4.2 * 2.8e-09 31.0 %
:HMM:PFM   79->147 PF01037 * AsnC_trans_reg 1.5e-08 30.4 69/74  
:HMM:PFM   255->317 PF01037 * AsnC_trans_reg 8.1e-08 31.7 63/74  
:HMM:PFM   187->228 PF09339 * HTH_IclR 4.8e-06 35.7 42/52  
:BLT:SWISS 15->152 REG6_PYRAB 1e-08 23.9 %
:BLT:SWISS 197->283 REG3_PYRHO 8e-04 28.7 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD56893.1 GT:GENE BAD56893.1 GT:PRODUCT hypothetical protein GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 2227312..2228361 GB:FROM 2227312 GB:TO 2228361 GB:DIRECTION + GB:PRODUCT hypothetical protein GB:PROTEIN_ID BAD56893.1 LENGTH 349 SQ:AASEQ MQTEGRPVKDSYVPDDVDFRIVHALQSAPRAPWGAVGDVAGVSAPTAARRWDRLVDSGLAWIVTYPGPAYLNTRCAAFVEVQVAQRGPDLMRELSRDGKVATIQRTAGDGDLLLTVMTFDLDSLGDWVQQLSGSPMVAHTRTRVVMQVFGESERWRVRALDVGEESTLSRYRPPPRPLVHQPDAVDLALIAALAADGRRSAVELADVCGISAAAVRRRLTYLVAERILSIRCEVAHVLGGWPVTANIWARATPRTLGTLVDALDAFPQIRVCCEVTGTANILMTAWLRRISELSRLEHELESQVPGLVIADRSITLETPKRLGSLLDRAGRCTGFHPLELLTTSRPATG GT:EXON 1|1-349:0| BL:SWS:NREP 2 BL:SWS:REP 15->152|REG6_PYRAB|1e-08|23.9|138/151| BL:SWS:REP 197->283|REG3_PYRHO|8e-04|28.7|87/100| SEG 183->196|davdlaliaalaad| SEG 287->302|lrriselsrleheles| BL:PDB:NREP 1 BL:PDB:REP 16->152|2znzC|2e-08|23.4|137/144| RP:PDB:NREP 2 RP:PDB:REP 15->153|2cyyA|2e-11|21.7|138/147| RP:PDB:REP 197->283|2e1cA|7e-07|17.0|87/147| HM:PFM:NREP 3 HM:PFM:REP 79->147|PF01037|1.5e-08|30.4|69/74|AsnC_trans_reg| HM:PFM:REP 255->317|PF01037|8.1e-08|31.7|63/74|AsnC_trans_reg| HM:PFM:REP 187->228|PF09339|4.8e-06|35.7|42/52|HTH_IclR| RP:SCP:NREP 4 RP:SCP:REP 15->59|1i1gA1|2e-05|24.4|45/60|a.4.5.32| RP:SCP:REP 77->149|1ri7A2|4e-09|21.9|73/86|d.58.4.2| RP:SCP:REP 197->228|1i1gA1|2e-04|37.5|32/60|a.4.5.32| RP:SCP:REP 241->320|1i1gA2|1e-06|13.8|80/80|d.58.4.2| HM:SCP:REP 12->59|2cg4A1|1.8e-05|27.1|48/0|a.4.5.32|1/2|"Winged helix" DNA-binding domain| HM:SCP:REP 71->157|1ri7A2|1.1e-09|25.6|86/0|d.58.4.2|1/2|Dimeric alpha+beta barrel| HM:SCP:REP 180->241|2cg4A1|3.8e-06|29.0|62/0|a.4.5.32|2/2|"Winged helix" DNA-binding domain| HM:SCP:REP 241->325|1ri7A2|2.8e-09|31.0|84/0|d.58.4.2|2/2|Dimeric alpha+beta barrel| OP:NHOMO 28 OP:NHOMOORG 16 OP:PATTERN -------------------------------------------------------------------- -------1-----------------2----------1526---------11-111--------1--1-12----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 272 STR:RPRED 77.9 SQ:SECSTR ##############cHHHHHHHHHHHHcTTccHHHHHHHHcccHHHHHHHHHHHHHHTcccccccccGGGGTccEEEEEEEEcTTcHHHHHHHHHTcTTEEEEEEccccccEEEEEEEccHHHHHHHHHHHHTcTTEEEEEEEccccccccccTccc#######################################TTccHHHHHHHHcccHHHHHHHHHHHHHHccccccccccGGGGTccEEEEEEEEcTTcHHHHHHHHHHTcTTEEEEEEccccccEEEEEEEccGGGHHHHcccccTTcTTEEEEEEEEEcccccccccc######################## DISOP:02AL 1-12, 346-349| PSIPRED cccccccccccccHHHHHHHHHHHHHHcccccHHHHHHHHcccHHHHHHHHHHHHHcccEEEEEEEcHHHccccEEEEEEEEEcccHHHHHHHHHccccEEEHEEEcccccEEEEEEEccHHHHHHHHHHHHcccccEEEEEEEEEEEEccccccccccccccccccccccccccccccccccHHHHHHHHHHHHcccccHHHHHHHHcccHHHHHHHHHHHHHcccEEEEEEEcHHHHcccEEEEEEEEEcHHHHHHHHHHHHHcccEEEEEEEcccccEEEEEEEccHHHHHHHHHHHHHHccccEEEEEEEEEEEEcccccccccccccccccHHHHHHccccccc //