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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD56910.1
DDBJ      :             putative transposase
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  39/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
a.4.1c.55.3
:343 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:RPS:PDB   158->284 1cz9A PDBj 9e-07 21.5 %
:RPS:SCOP  22->68 1pdnC  a.4.1.5 * 2e-05 28.3 %
:RPS:SCOP  160->253 1b92A  c.55.3.2 * 6e-06 11.4 %
:HMM:SCOP  16->93 1pdnC_ a.4.1.5 * 3.3e-09 34.6 %
:HMM:SCOP  129->297 1c6vA_ c.55.3.2 * 4.4e-20 30.1 %
:RPS:PFM   160->255 PF00665 * rve 2e-11 41.3 %
:HMM:PFM   117->257 PF00665 * rve 2e-24 36.0 111/120  
:HMM:PFM   27->78 PF01527 * Transposase_8 6.4e-06 30.4 46/76  
:BLT:SWISS 207->293 POLX_TOBAC 2e-05 33.8 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD56910.1 GT:GENE BAD56910.1 GT:PRODUCT putative transposase GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(2244167..2245198) GB:FROM 2244167 GB:TO 2245198 GB:DIRECTION - GB:PRODUCT putative transposase GB:PROTEIN_ID BAD56910.1 LENGTH 343 SQ:AASEQ MENANPPPTRPKDPSVLHRNAPLSIEGRRRLVQRCQHRPIAHVAAEMGISRQCASKWVNRWRRYGDLGLAFELHDEGTVIAVRTVTHQLAHLGLNRRRFLDPTGENNRAPRRIIARWPGHMVHVDEGRPHPRQRWVAGPWRRLRASQSRRQSQQRGAKAGYVYLHSVVDGYSRLAYTQAPDDEKADTAIRFMHRARAFLAAHGIGHIHRIVTDNGSCYRAHDFVKVLRGTRHQRIRPYTPRRNGKVERYQRILAEEFLDARTWTSKLQRSEALKVWGRVMEQAVRDEMIDRNPVQVFGLSTAVRASRGRVGGSARARTARGADAHRLGGCIGRRVGRQLPRLG GT:EXON 1|1-343:0| BL:SWS:NREP 1 BL:SWS:REP 207->293|POLX_TOBAC|2e-05|33.8|80/1328| SEG 141->155|rrlrasqsrrqsqqr| SEG 301->322|tavrasrgrvggsarartarga| RP:PDB:NREP 1 RP:PDB:REP 158->284|1cz9A|9e-07|21.5|121/139| RP:PFM:NREP 1 RP:PFM:REP 160->255|PF00665|2e-11|41.3|92/116|rve| HM:PFM:NREP 2 HM:PFM:REP 117->257|PF00665|2e-24|36.0|111/120|rve| HM:PFM:REP 27->78|PF01527|6.4e-06|30.4|46/76|Transposase_8| GO:PFM:NREP 2 GO:PFM GO:0003677|"GO:DNA binding"|PF00665|IPR001584| GO:PFM GO:0015074|"GO:DNA integration"|PF00665|IPR001584| RP:SCP:NREP 2 RP:SCP:REP 22->68|1pdnC|2e-05|28.3|46/123|a.4.1.5| RP:SCP:REP 160->253|1b92A|6e-06|11.4|88/144|c.55.3.2| HM:SCP:REP 16->93|1pdnC_|3.3e-09|34.6|78/0|a.4.1.5|1/1|Homeodomain-like| HM:SCP:REP 129->297|1c6vA_|4.4e-20|30.1|143/0|c.55.3.2|1/1|Ribonuclease H-like| OP:NHOMO 451 OP:NHOMOORG 39 OP:PATTERN -------------------------------------------------------------------- B----------2-2-64-------71-------9-73-1-------14-1*1--254------1---39------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1----------------1-11-----------1------1-------5-------------------------------------------------------------------9*--12-3------------------------------J----1-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1--------------------------------------55----------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 127 STR:RPRED 37.0 SQ:SECSTR #############################################################################################################################################################GTTccEEEEEEETTTccEEEEEEccccHHHHHHHHHHHHHHccccEHccccEEEEEccHHHHcHHHHHHHHHHTEEEEcTTcHHHHHHHHHHHHHHHHHHHHHHHHHTTccccccHHHHHHHHHHHH########################################################### DISOP:02AL 1-16, 341-343| PSIPRED ccccccccccccccccccccccccHHHHHHHHHHHHcccHHHHHHHHcccHHHHHHHHHHHHHcccccccHHHHcccccccHHHHHHHHHHHcccccccccccccccccccEEEEcccccEEEEEEEccccccccccccccccccccccccccccccccccEEEEEEEEccccEEEEEEEccccHHHHHHHHHHHHHHHHHcccccEEEEEEccccccccHHHHHHHHccEEEEEccccccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHcccccHHHHcccccccEEEEEcccHHHHHHHcHHcccccccccccc //