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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD56921.1
DDBJ      :             putative ScnC homolog
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  55/915 : Eukaryota  3/199 : Viruses  0/175   --->[See Alignment]
d.149.1
:236 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   18->214 2dd4C PDBj 2e-75 61.9 %
:RPS:PDB   20->213 1ahjA PDBj 2e-46 43.2 %
:RPS:SCOP  20->213 1ahjA  d.149.1.1 * 8e-47 43.2 %
:HMM:SCOP  2->218 1v29A_ d.149.1.1 * 1.9e-77 53.0 %
:RPS:PFM   28->211 PF02979 * NHase_alpha 4e-51 60.6 %
:HMM:PFM   18->213 PF02979 * NHase_alpha 1.7e-88 57.8 187/189  
:BLT:SWISS 18->214 SCNC_THITI 6e-75 61.9 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD56921.1 GT:GENE BAD56921.1 GT:PRODUCT putative ScnC homolog GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(2249998..2250708) GB:FROM 2249998 GB:TO 2250708 GB:DIRECTION - GB:PRODUCT putative ScnC homolog GB:PROTEIN_ID BAD56921.1 LENGTH 236 SQ:AASEQ MSHDHDHDAHAPIQTGTEISEFEVLETAIRELAIEKGLFSQEDHRRFSEWAQAVGPHGGSTLVARAWLDPDFKARLLADGTETCKEIGIDWRDPTGSGTPSDYTYFYVLENTPEVHNVIVCTLCSCYPRPVLGMSPDWYRTPNYRRRLVRWPREVLAEFGLHFPPEVEVRVHDSNQKSRFMVLPMRPAGTEGWTEEQLAAIVTRDTMIGVALPQVDWTAQKPPDRAEDAMRREARP GT:EXON 1|1-236:0| BL:SWS:NREP 1 BL:SWS:REP 18->214|SCNC_THITI|6e-75|61.9|197/243| SEG 224->235|draedamrrear| BL:PDB:NREP 1 BL:PDB:REP 18->214|2dd4C|2e-75|61.9|197/217| RP:PDB:NREP 1 RP:PDB:REP 20->213|1ahjA|2e-46|43.2|185/198| RP:PFM:NREP 1 RP:PFM:REP 28->211|PF02979|4e-51|60.6|175/185|NHase_alpha| HM:PFM:NREP 1 HM:PFM:REP 18->213|PF02979|1.7e-88|57.8|187/189|NHase_alpha| GO:PFM:NREP 3 GO:PFM GO:0003824|"GO:catalytic activity"|PF02979|IPR004232| GO:PFM GO:0006807|"GO:nitrogen compound metabolic process"|PF02979|IPR004232| GO:PFM GO:0046914|"GO:transition metal ion binding"|PF02979|IPR004232| RP:SCP:NREP 1 RP:SCP:REP 20->213|1ahjA|8e-47|43.2|185/198|d.149.1.1| HM:SCP:REP 2->218|1v29A_|1.9e-77|53.0|202/0|d.149.1.1|1/1|Nitrile hydratase alpha chain| OP:NHOMO 73 OP:NHOMOORG 58 OP:PATTERN -------------------------------------------------------------------- ---------------------2---2------31111121------------1-----------------------------1---------------------------------------------------------------1----------------1------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1111---1111---------------1--121-1--1---111232111----1------111--------1----------------------------------------------1111-11-------2----------------------------2-------------------------------------------------------------------------------------------------------------------------------------------------------------------1------------------------------------------------------1----------------------------1------------1---1------------------------------------------------------------------------------------------------------ ------1-----------------------------------------------------------------------------------------------------4-----------------------------------------------------------------------------------------1 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 203 STR:RPRED 86.0 SQ:SECSTR #################ccccHHHHHHHHHHHHHTTTcccTTHHHHHHHHHHTccTHHHHHHHHHHHHcHHHHHHHHHcHHHHHHTTTcccTTccTccTTTTcccEEEEEccTTEEEEEEcTTcccccTTTTccccTTTTcHHHHHHHHHcHHHHHHHHTccccTTcEEEEEEcccccEEEEEccccTTcTTccHHHHHHHccHHHHHTccccccTcccc################ DISOP:02AL 1-4, 232-236| PSIPRED ccccccccccccccccccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHccccccEEEEEEcccHHHHHHHHHHHHHHHHHHcccccccccccccccccEEEEEEccccccEEEEEEEccccccccccccccccccHHHHHHHHHcHHHHHHHHccccccccEEEEEEccccEEEEEEEccccccccccHHHHHHHHHHcccccccccccccEEcccHHHHHHHHHHcccc //