[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD56922.1
DDBJ      :             putative ScnA homolog
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  15/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
b.34.4
:100 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   4->94 2dxcG PDBj 2e-19 48.9 %
:RPS:PDB   5->94 2dxcG PDBj 1e-08 48.3 %
:RPS:SCOP  4->94 1ahjB  b.34.4.4 * 2e-06 38.2 %
:HMM:SCOP  4->96 1ireB_ b.34.4.4 * 7.2e-26 45.1 %
:RPS:PFM   4->94 PF02211 * NHase_beta 9e-11 42.0 %
:HMM:PFM   3->94 PF02211 * NHase_beta 1.7e-21 34.4 90/222  
:BLT:SWISS 4->94 SCNA_THITI 7e-19 48.9 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD56922.1 GT:GENE BAD56922.1 GT:PRODUCT putative ScnA homolog GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(2250705..2251007) GB:FROM 2250705 GB:TO 2251007 GB:DIRECTION - GB:PRODUCT putative ScnA homolog GB:PROTEIN_ID BAD56922.1 LENGTH 100 SQ:AASEQ MTRRFRIGDRVTVRRATSLFHTRTQAYTRGRTGVVVEYRPEWIIPEDEAWGRDDGRVEPFYVVRFRQRELWPNYTGHDADTLETEVSEHWLEPAEEDDPQ GT:EXON 1|1-100:0| BL:SWS:NREP 1 BL:SWS:REP 4->94|SCNA_THITI|7e-19|48.9|90/126| BL:PDB:NREP 1 BL:PDB:REP 4->94|2dxcG|2e-19|48.9|90/120| RP:PDB:NREP 1 RP:PDB:REP 5->94|2dxcG|1e-08|48.3|89/120| RP:PFM:NREP 1 RP:PFM:REP 4->94|PF02211|9e-11|42.0|88/201|NHase_beta| HM:PFM:NREP 1 HM:PFM:REP 3->94|PF02211|1.7e-21|34.4|90/222|NHase_beta| GO:PFM:NREP 3 GO:PFM GO:0006807|"GO:nitrogen compound metabolic process"|PF02211|IPR003168| GO:PFM GO:0018822|"GO:nitrile hydratase activity"|PF02211|IPR003168| GO:PFM GO:0046914|"GO:transition metal ion binding"|PF02211|IPR003168| RP:SCP:NREP 1 RP:SCP:REP 4->94|1ahjB|2e-06|38.2|89/212|b.34.4.4| HM:SCP:REP 4->96|1ireB_|7.2e-26|45.1|91/0|b.34.4.4|1/1|Electron transport accessory proteins| OP:NHOMO 16 OP:NHOMOORG 15 OP:PATTERN -------------------------------------------------------------------- ---------------------1---1------11111-11------------------------------------------1---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------2----------------------1----------------------------------------------------------------1---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1----------------------------1----------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 93 STR:RPRED 93.0 SQ:SECSTR #cccccTTcEEEEccccccccccccGGGTTcEEEEEEEEEEEccHHHHTTTccccccEEEEEEEEEGGGTcTTccGGGTcEEEEEEEGGGEEEc###### DISOP:02AL 1-2, 93-100| PSIPRED cccEEccccEEEEEEccccccEEccHHHcccEEEEEEEcccccccccccccccccccccEEEEEEcccEEccccccccccEEEEEEEccccccccccccc //