[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD56923.1
DDBJ      :             putative ScnB homolog
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  13/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
b.34.4
:141 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   14->139 2zzdB PDBj 3e-31 48.4 %
:RPS:PDB   14->139 2dxcB PDBj 5e-21 54.0 %
:RPS:SCOP  43->107 1ireB  b.34.4.4 * 4e-06 26.2 %
:HMM:SCOP  40->139 1v29B_ b.34.4.4 * 4.7e-25 42.0 %
:RPS:PFM   44->138 PF02211 * NHase_beta 8e-13 43.2 %
:HMM:PFM   43->132 PF02211 * NHase_beta 7.6e-14 37.5 88/222  
:BLT:SWISS 14->139 SCNB_THITI 9e-31 48.4 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD56923.1 GT:GENE BAD56923.1 GT:PRODUCT putative ScnB homolog GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(2251004..2251429) GB:FROM 2251004 GB:TO 2251429 GB:DIRECTION - GB:PRODUCT putative ScnB homolog GB:PROTEIN_ID BAD56923.1 LENGTH 141 SQ:AASEQ MSTSRPPEPAPDGVADIAPVLHRTLDSPYEISNELYAALRHVPHDVGGQPDLPVPYREKEEEPWEMNTYVTCECLGWRGAWNSEERRRAENDLGATLYFGLPYYARWATVAARVLVGKGLITPDELSVKIDEVRARSAARR GT:EXON 1|1-141:0| BL:SWS:NREP 1 BL:SWS:REP 14->139|SCNB_THITI|9e-31|48.4|126/157| BL:PDB:NREP 1 BL:PDB:REP 14->139|2zzdB|3e-31|48.4|126/153| RP:PDB:NREP 1 RP:PDB:REP 14->139|2dxcB|5e-21|54.0|126/152| RP:PFM:NREP 1 RP:PFM:REP 44->138|PF02211|8e-13|43.2|95/201|NHase_beta| HM:PFM:NREP 1 HM:PFM:REP 43->132|PF02211|7.6e-14|37.5|88/222|NHase_beta| GO:PFM:NREP 3 GO:PFM GO:0006807|"GO:nitrogen compound metabolic process"|PF02211|IPR003168| GO:PFM GO:0018822|"GO:nitrile hydratase activity"|PF02211|IPR003168| GO:PFM GO:0046914|"GO:transition metal ion binding"|PF02211|IPR003168| RP:SCP:NREP 1 RP:SCP:REP 43->107|1ireB|4e-06|26.2|65/228|b.34.4.4| HM:SCP:REP 40->139|1v29B_|4.7e-25|42.0|100/0|b.34.4.4|1/1|Electron transport accessory proteins| OP:NHOMO 17 OP:NHOMOORG 13 OP:PATTERN -------------------------------------------------------------------- ---------------------1---1------11112-22------------------------------------------1---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------2-------------1-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1---------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 126 STR:RPRED 89.4 SQ:SECSTR #############GGGGccccccccccGGGccHHHHHHHTccTTccTTccccccccccccccHHHHHHHHHHHHHHHTTcccHHHHHHHHTTTHHHHHHHccHHHHHHHHHHHHHHHTTcccHHHHHHHHHHHHHHHHH## DISOP:02AL 1-10, 138-141| PSIPRED ccccccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHccccccHHHHHHHHHHcccHHcccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHccc //