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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD56929.1
DDBJ      :             putative transporter
Swiss-Prot:             

Homologs  Archaea  20/68 : Bacteria  482/915 : Eukaryota  11/199 : Viruses  1/175   --->[See Alignment]
f.38.1
:456 amino acids
:PSIPRED
:DISOPRED
:RPS:SCOP  19->404 1pw4A  f.38.1.1 * 2e-10 11.2 %
:HMM:SCOP  1->443 1pw4A_ f.38.1.1 * 3.5e-62 26.9 %
:RPS:PFM   33->406 PF00083 * Sugar_tr 2e-12 32.3 %
:HMM:PFM   24->437 PF00083 * Sugar_tr 2.5e-26 24.1 395/451  
:BLT:SWISS 24->431 SHIA_ECOLI 8e-72 41.4 %
:PROS 197->211|PS00211|ABC_TRANSPORTER_1
:PROS 131->156|PS00217|SUGAR_TRANSPORT_2
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD56929.1 GT:GENE BAD56929.1 GT:PRODUCT putative transporter GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 2255410..2256780 GB:FROM 2255410 GB:TO 2256780 GB:DIRECTION + GB:PRODUCT putative transporter GB:PROTEIN_ID BAD56929.1 LENGTH 456 SQ:AASEQ MATAKDKSINRRAHTSLPVIAGSSLAGTAVEWYDFFLYGTAAALVFNKLFFPSEDPLVGTMLAFATYAVGFVARPLGAAVLGHFGDVKGRRATLIASLLLMGVSTFLIALLPTYAAIGVTAPLLLVLLRLVQGFALGGEWGGAVLLVSEHGDSKRRAFWSAWPNLGPPLGNLMAAGALALLGAVLPEEAFLSWGWRVAFGMSALLVVIGLVLRLYVAETPLFEQTRAATSPAVLRMPLTAAVRGYWRQILLAAFTRFGENAGFYIFSLFVITYLTQILDLPRSTGLNAVMIGMVVALVAIPLFAVLADRIGRRPIYIGASIATIVWAFAFFALLDTEATGAIFLAVAVGLVIFAAYSAVIGAFFSELFPTEVRYSGVSLAYNLASVLAGSLAPIIAIALYDRFGSGQAIGAYLALMGVISLVAALVAKETRTVDLADVQEEAPATGTATDAAVVIP GT:EXON 1|1-456:0| BL:SWS:NREP 1 BL:SWS:REP 24->431|SHIA_ECOLI|8e-72|41.4|408/438| PROS 197->211|PS00211|ABC_TRANSPORTER_1|PDOC00185| PROS 131->156|PS00217|SUGAR_TRANSPORT_2|PDOC00190| TM:NTM 12 TM:REGION 20->42| TM:REGION 50->72| TM:REGION 92->114| TM:REGION 117->138| TM:REGION 168->190| TM:REGION 199->221| TM:REGION 245->267| TM:REGION 286->308| TM:REGION 314->336| TM:REGION 344->366| TM:REGION 380->402| TM:REGION 407->429| SEG 123->131|lllvllrlv| SEG 165->186|lgpplgnlmaagalallgavlp| RP:PFM:NREP 1 RP:PFM:REP 33->406|PF00083|2e-12|32.3|347/433|Sugar_tr| HM:PFM:NREP 1 HM:PFM:REP 24->437|PF00083|2.5e-26|24.1|395/451|Sugar_tr| GO:PFM:NREP 4 GO:PFM GO:0005215|"GO:transporter activity"|PF00083|IPR005828| GO:PFM GO:0006810|"GO:transport"|PF00083|IPR005828| GO:PFM GO:0016021|"GO:integral to membrane"|PF00083|IPR005828| GO:PFM GO:0055085|"GO:transmembrane transport"|PF00083|IPR005828| RP:SCP:NREP 1 RP:SCP:REP 19->404|1pw4A|2e-10|11.2|366/434|f.38.1.1| HM:SCP:REP 1->443|1pw4A_|3.5e-62|26.9|416/447|f.38.1.1|1/1|MFS general substrate transporter| OP:NHOMO 2754 OP:NHOMOORG 514 OP:PATTERN ------2878998795-6233421-------------------------------------113---- -1--131588C-2153322-27--1U2222215999DNno--224-1--441PJL826-----228Q87311111222-13-A--111--------1--1-2---2-2-2-----------------1-1---1-------11111--------------131---------1-----1-----1--------1222222211222222------222-23--1-------1-1111111111111111-112----22-2-----11-----111-------------------------------------------------------------------------------------------------1--44461442452H551-33323244444443435-66C55H7D221-666622443444C4-----5-----1-43444444255121-1443334441122468A75E4555553233-1564-63346XOPXRUBFIIEXXcOKLKIBHYKZBJFC-5GD932622811-9436---1141-------11--1-1--1----21--------------111111-----1-5455341-2222212-------1-1---------------1--------------1---------77771764668577755-665567555667555455678766--26656666666556566844643441-333333233332----11111575711-11---1-1-22211--288989581125-AAC9CGD91FGGG-B9A855448555----------1----44545444461111---------------------------------------------------------1- -------------------------------------------------------------------------------------------------------1----6------------------------------------------------------3------------11-----1----1---241---1 --------------------------------------------------------------------------------------------------------------------------------------------------------1---------------------- DISOP:02AL 5-15, 221-240, 435-453, 455-456| PSIPRED cccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHcHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHccccccccHHHHcccccccccccccccccc //