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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD56936.1
DDBJ      :             putative transcriptional regulator
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  58/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
a.4.1
:221 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   28->93 2w53A PDBj 4e-08 34.8 %
:RPS:PDB   26->221 3c2bA PDBj 2e-11 13.8 %
:RPS:SCOP  23->88 2fd5A1  a.4.1.9 * 6e-13 33.3 %
:HMM:SCOP  16->104 1t33A1 a.4.1.9 * 1.2e-16 29.5 %
:HMM:PFM   33->76 PF00440 * TetR_N 7.9e-17 50.0 44/47  
:BLT:SWISS 20->170 Y2936_MYCBO 2e-16 34.0 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD56936.1 GT:GENE BAD56936.1 GT:PRODUCT putative transcriptional regulator GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(2261388..2262053) GB:FROM 2261388 GB:TO 2262053 GB:DIRECTION - GB:PRODUCT putative transcriptional regulator GB:PROTEIN_ID BAD56936.1 LENGTH 221 SQ:AASEQ MSAAPHASPPAARPARPRRTQEQRSAETQAKVMDAAIECLLEVGYGETTTQMVAKRAGVTRGALLHHYPSREDLVAGAVRYLAVKRTEEALRTFARLTQGESLIPDALDLLWALYQGPLFTAAIELLVASRTDPALARQVEAVEEVVVSSIKAAGSAMALSGISAESFNELVVTAMDAITGLLIRCYPARDSDRPERAWARLRTHLLVLAHAQVGRAANAG GT:EXON 1|1-221:0| BL:SWS:NREP 1 BL:SWS:REP 20->170|Y2936_MYCBO|2e-16|34.0|147/195| SEG 2->19|saaphasppaarparprr| SEG 140->148|veaveevvv| BL:PDB:NREP 1 BL:PDB:REP 28->93|2w53A|4e-08|34.8|66/202| RP:PDB:NREP 1 RP:PDB:REP 26->221|3c2bA|2e-11|13.8|196/198| HM:PFM:NREP 1 HM:PFM:REP 33->76|PF00440|7.9e-17|50.0|44/47|TetR_N| RP:SCP:NREP 1 RP:SCP:REP 23->88|2fd5A1|6e-13|33.3|66/76|a.4.1.9| HM:SCP:REP 16->104|1t33A1|1.2e-16|29.5|88/0|a.4.1.9|1/1|Homeodomain-like| OP:NHOMO 77 OP:NHOMOORG 58 OP:PATTERN -------------------------------------------------------------------- ----2---------42211-1---111111111---5322-1------------------111-122111-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1------------2111-------------11-----------------1--1------------------1--2--------1-1-----------1--11-------------------------------11--------11-1------------------1----------------1-1--------1------------------------------------------2-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1--------1------------------------------------------------------------------------------------------------------ ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 202 STR:RPRED 91.4 SQ:SECSTR ###################cccccccHHHHHHHHHHHHHHHHHcGGGccHHHHHHHHTccHHHHHHHHccHHHHHHHHHHHHTcccccccccccccHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHcccHHHHHHHHTTHHHHHHHHHHHHHHHHTTccccccHHHHHHHHHHHHHTTHHHHHTTccccccHHHHHHHHHHHHHHHHccHHHHHHHT DISOP:02AL 1-30, 218-221| PSIPRED ccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHcccHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcccccccc //