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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD56938.1
DDBJ      :             putative short chain dehydrogenase
Swiss-Prot:             

Homologs  Archaea  39/68 : Bacteria  799/915 : Eukaryota  183/199 : Viruses  0/175   --->[See Alignment]
c.2.1
:293 amino acids
:SECSTR
:PSIPRED
:BLT:PDB   7->268 2et6A PDBj 3e-33 40.1 %
:RPS:PDB   4->201 1dohB PDBj 1e-27 29.1 %
:RPS:SCOP  6->201 1a27A  c.2.1.2 * 3e-27 22.8 %
:HMM:SCOP  1->263 1zemA1 c.2.1.2 * 1.1e-58 38.1 %
:RPS:PFM   7->128 PF00106 * adh_short 2e-15 48.2 %
:HMM:PFM   7->188 PF00106 * adh_short 6e-34 31.5 165/167  
:BLT:SWISS 7->268 FOX2_CANTR 4e-38 39.9 %
:PROS 158->186|PS00061|ADH_SHORT
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD56938.1 GT:GENE BAD56938.1 GT:PRODUCT putative short chain dehydrogenase GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(2263653..2264534) GB:FROM 2263653 GB:TO 2264534 GB:DIRECTION - GB:PRODUCT putative short chain dehydrogenase GB:PROTEIN_ID BAD56938.1 LENGTH 293 SQ:AASEQ MGTLDGKVAVITGAGRGIGREHALLFAREGAAVVVNDYGGSNSGEGHDAGPAQQVVDEIVAAGGRAVADTGNVADWSDAKALVDRAVAEFGRLDVVVNNAGILRDGFLAGMTEAQWDAVLDVHLKGHFAVLRHAAAHWKDRSKAGDQPDAAVINTASASGTTVPNAGQANYGAAKAAIAALTLVAAEELGRYGVRVNAIAPIARTRLTLATPGMGAMMAAEAESAENEGGFDAFSPANISPLVAYLAGDACRLTGKVFAVQGGAISELAGWHDVKTIETDGPWLIDDIAARLP GT:EXON 1|1-293:0| BL:SWS:NREP 1 BL:SWS:REP 7->268|FOX2_CANTR|4e-38|39.9|238/906| PROS 158->186|PS00061|ADH_SHORT|PDOC00060| SEG 166->186|agqanygaakaaiaaltlvaa| SEG 213->230|gmgammaaeaesaenegg| BL:PDB:NREP 1 BL:PDB:REP 7->268|2et6A|3e-33|40.1|227/582| RP:PDB:NREP 1 RP:PDB:REP 4->201|1dohB|1e-27|29.1|182/271| RP:PFM:NREP 1 RP:PFM:REP 7->128|PF00106|2e-15|48.2|114/169|adh_short| HM:PFM:NREP 1 HM:PFM:REP 7->188|PF00106|6e-34|31.5|165/167|adh_short| GO:PFM:NREP 2 GO:PFM GO:0008152|"GO:metabolic process"|PF00106|IPR002198| GO:PFM GO:0016491|"GO:oxidoreductase activity"|PF00106|IPR002198| RP:SCP:NREP 1 RP:SCP:REP 6->201|1a27A|3e-27|22.8|184/285|c.2.1.2| HM:SCP:REP 1->263|1zemA1|1.1e-58|38.1|244/0|c.2.1.2|1/1|NAD(P)-binding Rossmann-fold domains| OP:NHOMO 6365 OP:NHOMOORG 1021 OP:PATTERN --1--22322222132-31--11-31162225-1---------11-32--311-1-----1-412-12 89E1K--222313-YlVDE-DT11NcEDEEEJTakbOa*r1Q4b5642252-D55223--66F-98EIHC51---111-165I1-111232212111--41A153L5K4811111111111111143222222332866892228647993221222111112-417A6E3111111111111A3322331A2A998998AA79A98A8A8EEBC9886CADAA56666657M7333332222333226667641813413-1-243324212-35244323333322222222222222222223322223212222122213355A333322333442552344321--3721263122125333334312516O88E11-1185OHD115FCEEC7787668888F-77877H9BALI1RCCAEIDRSTGKCD5C6B2B988B646444444448C98117511------------11--1----------1AKR947DB6HMJLROJ8CACCIITMEEEC5CXCQGcNL36HG97599ABAH8JF4A53323521111111228C753I4821111-222112542A313324247F21--------------------1-1--2256527586A53-4423279322332425221-13224-1----97774A46665666666-6566656777646766767CFE633255435655555545455C56344351-5555555555551114131112332189B7111414111111231788B937364A4DEDF9EFHBAAECCCBC41111211112338434434635678545441112111--11444444--------1-2-------------------------2232133353151 11--234-1---2589GBACDGDNCKE8955347757B9A8BA6769CACCHMP8B6A8644212122121114311111211211-3-CQ9G9D73434638742-A52b4A42531-2123245-22892-234-21-4213-1311231-222148FDE58987466A8F6A3322M1113687AUED74284352 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 292 STR:RPRED 99.7 SQ:SECSTR GGGcTTcEEEETTTTcHHHHHHHHHHHHTTcEEEEEEcEEccTTTGccHHHHHHHHHHHHHTTccEEEEEccTTcHHHHHHHHHHHHHHHccccEEEEcccccccccGGGccHHHHHHHHHHHTHHHHHHHHHHHHHccTTcEcEHHTcEEEEEccGGGTccccccccHHHHHHHHHHHHHHHHHHHHHGGGTcEEEEEEEHHHHHTTTcccccccHHHHHHHHHHHHHHTccEEEEcccHHHHHHcccHHHHHHHHHHTTcccccccGGGcccTTccccccTTcccccccc# PSIPRED cccccccEEEEEccccHHHHHHHHHHHHcccEEEEEccccccccccccHHHHHHHHHHHHHcccEEEEEEcccccHHHHHHHHHHHHHHHccccEEEEcccccccccHHHccHHHHHHHHHHHcHHHHHHHHHHHHHHHHccccccccccEEEEEccHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHccEEEEEccccccHHHHHcccccccHHHHHHHHHcccccccccHHHHHHHHHHHHcHHHcccccEEEEcccHHHccccccccccccccccccHHHHHHccc //