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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD56941.1
DDBJ      :             putative lipid-transfer protein
Swiss-Prot:             

Homologs  Archaea  66/68 : Bacteria  140/915 : Eukaryota  128/199 : Viruses  0/175   --->[See Alignment]
c.95.1
:402 amino acids
:SECSTR
:PSIPRED
:BLT:PDB   32->394 1ulqC PDBj 2e-10 27.4 %
:RPS:PDB   5->394 1dluA PDBj 8e-30 18.7 %
:RPS:SCOP  5->239 1dluA1  c.95.1.1 * 1e-13 16.5 %
:RPS:SCOP  222->402 1tqyA2  c.95.1.1 * 2e-10 17.4 %
:HMM:SCOP  4->241 1ulqA1 c.95.1.1 * 4.7e-49 31.6 %
:HMM:SCOP  240->397 1afwA2 c.95.1.1 * 1.1e-28 41.1 %
:RPS:PFM   33->125 PF00108 * Thiolase_N 5e-09 39.8 %
:RPS:PFM   276->396 PF02803 * Thiolase_C 2e-08 37.4 %
:HMM:PFM   265->380 PF02803 * Thiolase_C 8.9e-13 26.8 97/123  
:HMM:PFM   30->176 PF00108 * Thiolase_N 1.9e-12 28.7 136/264  
:BLT:SWISS 4->398 NLTP_RABIT e-139 63.1 %
:PROS 85->103|PS00098|THIOLASE_1
:PROS 339->355|PS00737|THIOLASE_2
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD56941.1 GT:GENE BAD56941.1 GT:PRODUCT putative lipid-transfer protein GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(2265925..2267133) GB:FROM 2265925 GB:TO 2267133 GB:DIRECTION - GB:PRODUCT putative lipid-transfer protein GB:PROTEIN_ID BAD56941.1 LENGTH 402 SQ:AASEQ MANRVFVVGVGMTKFEKPGRRKNADGSDWDYPDMARESGTAALADAGIAYTDVQQAYVGYVYGESTSGQRAVYELGLTGIPVVNVNNNCSTGSTALYLAAQAIRGGLADCTLALGFEKMQPGSLGATFTDREQPMMRHMDLLAQISEVKFPPAPWMFGAAGREHMQKYGTTAEQFARIGHKNHAHSVNNPYAQFQDAYTLDEILAAPMIYDPLTKLQCSPTSDGSGAAVLASEAFVARHDLAGQAVEIVGQAMTTDFESSFAAGTAAALIGYDMNVAAAQQVYEQSGLGPRDFQVIELHDCFSANELLLYEALGLCGAGEAGALVDAGDTTYGGRWVVNPSGGLISKGHPLGATGLAQCAELTWQLRGTADKRQVDGVTAALQHNIGLGGAAVVTAYQRAER GT:EXON 1|1-402:0| BL:SWS:NREP 1 BL:SWS:REP 4->398|NLTP_RABIT|e-139|63.1|390/547| PROS 85->103|PS00098|THIOLASE_1|PDOC00092| PROS 339->355|PS00737|THIOLASE_2|PDOC00092| SEG 306->324|elllyealglcgageagal| BL:PDB:NREP 1 BL:PDB:REP 32->394|1ulqC|2e-10|27.4|332/399| RP:PDB:NREP 1 RP:PDB:REP 5->394|1dluA|8e-30|18.7|353/389| RP:PFM:NREP 2 RP:PFM:REP 33->125|PF00108|5e-09|39.8|93/261|Thiolase_N| RP:PFM:REP 276->396|PF02803|2e-08|37.4|107/131|Thiolase_C| HM:PFM:NREP 2 HM:PFM:REP 265->380|PF02803|8.9e-13|26.8|97/123|Thiolase_C| HM:PFM:REP 30->176|PF00108|1.9e-12|28.7|136/264|Thiolase_N| GO:PFM:NREP 4 GO:PFM GO:0008152|"GO:metabolic process"|PF00108|IPR002155| GO:PFM GO:0016747|"GO:transferase activity, transferring acyl groups other than amino-acyl groups"|PF00108|IPR002155| GO:PFM GO:0008152|"GO:metabolic process"|PF02803|IPR002155| GO:PFM GO:0016747|"GO:transferase activity, transferring acyl groups other than amino-acyl groups"|PF02803|IPR002155| RP:SCP:NREP 2 RP:SCP:REP 5->239|1dluA1|1e-13|16.5|231/265|c.95.1.1| RP:SCP:REP 222->402|1tqyA2|2e-10|17.4|161/205|c.95.1.1| HM:SCP:REP 4->241|1ulqA1|4.7e-49|31.6|234/0|c.95.1.1|1/1|Thiolase-like| HM:SCP:REP 240->397|1afwA2|1.1e-28|41.1|124/124|c.95.1.1|1/1|Thiolase-like| OP:NHOMO 844 OP:NHOMOORG 334 OP:PATTERN 331-1156556555471132321842223135111111111111111111111111111112331-22 --1-6--1------8K955-59--86555556E8E84D7B-C39--------111--1----6--215-51-----------------------------------------------------------------111-1---1----------------------------------------------------------------1----------------------------------------------------------------------------------------------------------------------------------------------------------1-----------6222-------34611154652--------------1--3-1115--111-----11113--1--1-----11--------1-------------------------------------32B2--B646-1122------1121------1-819BA-11--11-----3248--1----------------5---D25------------1--1-1--------1----------------------------------1--2-------12------2---------------------------------------------------------------------------------------------------------------------1-------------------------1-1111111------1---------------------------------------------221122------------------------------------------------- ------1-211----222321112122211111111222222211111121112111111111--------------------------1212111----1-1111-2--11111112211112311323A2-3122111--211221111222211123241221121131131--------------1--------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 401 STR:RPRED 99.8 SQ:SECSTR cTTTEEEEEEEEcccEETTcTTTcTTTTccHHHHHHHHHHHHHHHHTccGGGccEEEEEccccTTccccHHHHTTccTTcEEEEEccGGGHHHHHHHHHHHHHHTTcccEEEEEEEEEcTTccEEccccccccccccccEEHHHHHHTccTTTcccHHHHHHHHHHHHTccHHHHHHHHHHHHHHHHHHHHTTTTTTTcccEEEccccTTcccccccccccEEEEEEEEEEEHHHHHHHTccccEEEEEEEEEEEcEEEEEEEEccGGGGGGGTHHHHHHHHHHHHTccGGGccEEEEccccHHHHHHHHHHHcccGGGHHHHHHHHHHHHTccGGGccTTccHHHHcccTTTHHHHHHHHHHHHHHHHTccEEETTccEEEEETTTEEEEEEEEEEEEcc# PSIPRED ccccEEEEEEEEccccccccccccccccccHHHHHHHHHHHHHHHccccHHHccEEEEEEEccccHHHHHHHHHHccccccEEEEcccccHHHHHHHHHHHHHHcccccEEEEEEEccccccccccccccccccccccccccccHHcccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccHHccccccHHHcccccccHHHHHcccccccccccEEEEEccHHHHHHHcccHHHHHHccccHHcccccHHHccccHHHcccccHHHHHHHHHHHccccHHHccEEEEcccHHHHHHHHHHHccccccccHHHHHHcccccccccccccccccHHHHccHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEEEcccHHHHHHHHHHHHHcc //