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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD56942.1
DDBJ      :             putative transcriptional regulator
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  108/915 : Eukaryota  1/199 : Viruses  0/175   --->[See Alignment]
a.24.16a.4.1b.82.1b.82.4
:334 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   217->310 2k9sA PDBj 1e-04 28.3 %
:RPS:PDB   62->134 2b8mA PDBj 7e-04 6.8 %
:RPS:PDB   210->319 1bl0A PDBj 5e-17 21.5 %
:RPS:SCOP  59->144 1xjaA  b.82.4.1 * 9e-06 28.4 %
:RPS:SCOP  208->310 1v4aA1  a.24.16.4 * 8e-12 12.0 %
:HMM:SCOP  41->129 1lknA_ b.82.1.8 * 2.4e-05 23.9 %
:HMM:SCOP  207->260 1d5yA1 a.4.1.8 * 7.9e-06 30.2 %
:HMM:SCOP  261->310 1d5yA2 a.4.1.8 * 9.7e-10 39.6 %
:RPS:PFM   276->311 PF00165 * HTH_AraC 2e-05 47.2 %
:HMM:PFM   220->258 PF00165 * HTH_AraC 0.00014 31.6 38/42  
:HMM:PFM   279->310 PF00165 * HTH_AraC 6.5e-13 45.2 31/42  
:HMM:PFM   86->124 PF07883 * Cupin_2 5.4e-06 25.6 39/71  
:BLT:SWISS 14->245 YNI2_BACSX 7e-26 36.4 %
:BLT:SWISS 217->310 POCR_SALTY 1e-07 31.9 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD56942.1 GT:GENE BAD56942.1 GT:PRODUCT putative transcriptional regulator GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 2267393..2268397 GB:FROM 2267393 GB:TO 2268397 GB:DIRECTION + GB:PRODUCT putative transcriptional regulator GB:PROTEIN_ID BAD56942.1 LENGTH 334 SQ:AASEQ MSTLAPAATPPSAERFDTWQETISHAFVPLTATPLTAAGFDGTLSCHEVGSLQLNEVGGGPVRVERDPRAIRRADPGYIKLGLQTRGRGAVVQDGRTAVLGPGDLAVYDTGRPYTLHFDQPFQMIVAMFPRESWQIRAAELTEITARRIGGRGGVGALLAPFLRAIPATLACGDLSRDIHIADAVLDLLTAAVTEFGGVEERARSAGAGLLVQVKAFIDAHLADPMLSVPDIAAAHHISVRYLQRLFETEGTTVTTWIRQRRLERIRRDLADPRIDRSTSAVAARWGLADASHFSKLFKAAYGMTPRQYRLAASRPDRRAPVREWPNSCTPAHK GT:EXON 1|1-334:0| BL:SWS:NREP 2 BL:SWS:REP 14->245|YNI2_BACSX|7e-26|36.4|231/258| BL:SWS:REP 217->310|POCR_SALTY|1e-07|31.9|91/303| SEG 2->13|stlapaatppsa| SEG 147->156|rriggrggvg| SEG 182->194|adavldlltaavt| SEG 259->268|rqrrlerirr| BL:PDB:NREP 1 BL:PDB:REP 217->310|2k9sA|1e-04|28.3|92/107| RP:PDB:NREP 2 RP:PDB:REP 62->134|2b8mA|7e-04|6.8|73/105| RP:PDB:REP 210->319|1bl0A|5e-17|21.5|107/116| RP:PFM:NREP 1 RP:PFM:REP 276->311|PF00165|2e-05|47.2|36/40|HTH_AraC| HM:PFM:NREP 3 HM:PFM:REP 220->258|PF00165|0.00014|31.6|38/42|HTH_AraC| HM:PFM:REP 279->310|PF00165|6.5e-13|45.2|31/42|HTH_AraC| HM:PFM:REP 86->124|PF07883|5.4e-06|25.6|39/71|Cupin_2| GO:PFM:NREP 4 GO:PFM GO:0003700|"GO:transcription factor activity"|PF00165|IPR000005| GO:PFM GO:0005622|"GO:intracellular"|PF00165|IPR000005| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF00165|IPR000005| GO:PFM GO:0043565|"GO:sequence-specific DNA binding"|PF00165|IPR000005| RP:SCP:NREP 2 RP:SCP:REP 59->144|1xjaA|9e-06|28.4|81/165|b.82.4.1| RP:SCP:REP 208->310|1v4aA1|8e-12|12.0|100/151|a.24.16.4| HM:SCP:REP 41->129|1lknA_|2.4e-05|23.9|88/89|b.82.1.8|1/1|RmlC-like cupins| HM:SCP:REP 207->260|1d5yA1|7.9e-06|30.2|53/54|a.4.1.8|1/2|Homeodomain-like| HM:SCP:REP 261->310|1d5yA2|9.7e-10|39.6|48/0|a.4.1.8|1/1|Homeodomain-like| OP:NHOMO 173 OP:NHOMOORG 109 OP:PATTERN -------------------------------------------------------------------- ----11-1112-------------1-----------5294---1--------3321--------11-221----------------------------------------------------------------------1-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------211------21243---------------1--1--------5--1-2112----------2---21------------------------------------------------------11--1----222322-111111-21111112-31-11------41--11--3111--1---------------1------------------------------1----------------------------------------------------------1-----------------------------1--1-----------11-11-1-1---------------------1----------------------------------1-------------------11111-1-----222211-2-1311---2------------------------------------------------------------------------------------------------- -------------------------------------------------------------------------------------------------------------------------------------------------------------------1----------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 185 STR:RPRED 55.4 SQ:SECSTR #############################################################EEEEEETTccccEEccccEEEEEEEcEEEEETTcccEEEETTcEEEEcTTcEEEEccccEEEEEEEEcccGGG#########################################################################HHHHHHHHHHHHTTTTccccccHHHHHHccccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHcHHcccHHHHHHHTTcccHHHHHHHHHHHHcccHHHHHTccccccTT############### DISOP:02AL 1-3, 195-209, 309-324, 326-327, 330-334| PSIPRED cccccccccccHHHHHHHHHHHHHHHHcccccccccccccEEEEEEEEcccEEEEEEEEccEEEEEcHHHHccccccEEEEEEEEccEEEEEEccEEEEEcccEEEEEcccccEEEEEccccEEEEEEEcHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHccccccHHHHHHHHcccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHccccHHHHHHHHHHHHcccHHHHHHHHccccccccHHHcccccccccc //