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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD56944.1
DDBJ      :             putative cation transporter
Swiss-Prot:             

Homologs  Archaea  3/68 : Bacteria  363/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
c.2.1d.286.1
:210 amino acids
:SECSTR
:PSIPRED
:BLT:PDB   1->123 1lsuA PDBj 1e-27 43.9 %
:RPS:PDB   46->209 2bkoA PDBj 4e-15 12.1 %
:RPS:SCOP  2->132 1id1A  c.2.1.9 * 5e-11 13.8 %
:RPS:SCOP  130->209 1vctA2  d.286.1.1 * 4e-13 18.8 %
:HMM:SCOP  1->128 1lsuA_ c.2.1.9 * 3.1e-28 31.2 %
:HMM:SCOP  123->210 2fy8A2 d.286.1.1 * 1.4e-17 35.2 %
:RPS:PFM   1->113 PF02254 * TrkA_N 1e-10 32.1 %
:RPS:PFM   152->209 PF02080 * TrkA_C 4e-11 52.6 %
:HMM:PFM   2->114 PF02254 * TrkA_N 1.6e-24 32.4 111/116  
:HMM:PFM   147->209 PF02080 * TrkA_C 3.3e-16 41.9 62/71  
:HMM:PFM   99->139 PF09671 * Spore_GerQ 0.00011 35.9 39/81  
:BLT:SWISS 1->206 KTRC_BACSU 1e-37 38.5 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD56944.1 GT:GENE BAD56944.1 GT:PRODUCT putative cation transporter GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(2269596..2270228) GB:FROM 2269596 GB:TO 2270228 GB:DIRECTION - GB:PRODUCT putative cation transporter GB:PROTEIN_ID BAD56944.1 LENGTH 210 SQ:AASEQ MIGLGRFGSALARELVTHGTEVLALDANPAVVQQYADEFTHVSAVDTTDAEALAQLGVPDFPHAVVGIGSNMEASILTTSLLSDFAIPRIWAKATSRRHGQILERVGAHHVVLPEHDMGERVAHLVTGRMIDYIEFDADYAMAKTTAPAMSIGKTLTASGLRKRYAITVVAIKHRGGEFTYATPDTVVAAGDELIVSGRIDEVERFADLT GT:EXON 1|1-210:0| BL:SWS:NREP 1 BL:SWS:REP 1->206|KTRC_BACSU|1e-37|38.5|205/221| BL:PDB:NREP 1 BL:PDB:REP 1->123|1lsuA|1e-27|43.9|123/134| RP:PDB:NREP 1 RP:PDB:REP 46->209|2bkoA|4e-15|12.1|157/190| RP:PFM:NREP 2 RP:PFM:REP 1->113|PF02254|1e-10|32.1|112/116|TrkA_N| RP:PFM:REP 152->209|PF02080|4e-11|52.6|57/71|TrkA_C| HM:PFM:NREP 3 HM:PFM:REP 2->114|PF02254|1.6e-24|32.4|111/116|TrkA_N| HM:PFM:REP 147->209|PF02080|3.3e-16|41.9|62/71|TrkA_C| HM:PFM:REP 99->139|PF09671|0.00011|35.9|39/81|Spore_GerQ| GO:PFM:NREP 3 GO:PFM GO:0006813|"GO:potassium ion transport"|PF02254|IPR003148| GO:PFM GO:0006813|"GO:potassium ion transport"|PF02080|IPR006037| GO:PFM GO:0008324|"GO:cation transmembrane transporter activity"|PF02080|IPR006037| RP:SCP:NREP 2 RP:SCP:REP 2->132|1id1A|5e-11|13.8|130/153|c.2.1.9| RP:SCP:REP 130->209|1vctA2|4e-13|18.8|80/94|d.286.1.1| HM:SCP:REP 1->128|1lsuA_|3.1e-28|31.2|128/134|c.2.1.9|1/1|NAD(P)-binding Rossmann-fold domains| HM:SCP:REP 123->210|2fy8A2|1.4e-17|35.2|88/0|d.286.1.1|1/1|TrkA C-terminal domain-like| OP:NHOMO 401 OP:NHOMOORG 366 OP:PATTERN ------------------------1--1------1--------------------------------- --1--11----111----------------------1------111111111111221--11---11---11111-11----11----1111-1--1---1--1----1-------------------------1111111----11111111221111111111111111111111111111111--11--2211111111111111123221211111122111111111211111111111111111111111----1---1111---1-11----11111111--1111111111111111111111111111111111-32--1111111111-1111111211112111111111-1111111-111-1----------------------------------------1------------------------1-------------------------------------------------------1------------------------------------------------1---11-----------------21--12-1132122222----11-121-----1111--1-111111-1-------11-----11-----1----1111---1111-2--1----------------------------------------------------------------------------------------------------------------1--1------------11-1111111111----------1----1-------------1111-----12111----------------1111----11111111221----1-1111111111111111---------------1 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 209 STR:RPRED 99.5 SQ:SECSTR EEcccHHHHHHHHHTTTccEEEEEccGGGHHHHHTTTcEEEEHHcHHHHHHHHHHHHHHHHHHHHHHTcHHHHHHHHHHHHcccHHHHHHHEEcccGGHHHHHHHHHHHHHHHHHHHHHHHHHTTccccHHHHHHcccEEEEEEccTTcTTTTccHHHHTHHHHHccEEEEEEETTEEEEcccTTccccTTcEEEEEEcHHHHHHHHHH# PSIPRED cccccHHHHHHHHHHHHccccEEEEEccHHHHHHHHHccccEEEEccccHHHHHHccHHHccEEEEEccccHHHHHHHHHHHHHccccEEEEEEccHHHHHHHHHcccccEEcHHHHHHHHHHHHHHHHHHHHcccccccEEEEEEccHHHccccHHHHccccccccEEEEEEEccEEEEccccccEEccccEEEEEEcHHHHHHHHHcc //