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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD56946.1
DDBJ      :             putative peptidase
Swiss-Prot:             

Homologs  Archaea  10/68 : Bacteria  295/915 : Eukaryota  71/199 : Viruses  0/175   --->[See Alignment]
c.56.5
:408 amino acids
:SECSTR
:PSIPRED
:BLT:PDB   10->398 1z2lB PDBj 3e-43 31.6 %
:RPS:PDB   4->404 3dljB PDBj 4e-24 10.7 %
:RPS:SCOP  4->296 1z2lA1  c.56.5.4 * 2e-42 25.2 %
:HMM:SCOP  1->404 1r3nA1 c.56.5.4 * 1.6e-63 36.9 %
:HMM:PFM   76->401 PF01546 * Peptidase_M20 3.8e-24 29.0 138/171  
:BLT:SWISS 4->397 AMAB1_BACST 4e-47 35.0 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD56946.1 GT:GENE BAD56946.1 GT:PRODUCT putative peptidase GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(2271822..2273048) GB:FROM 2271822 GB:TO 2273048 GB:DIRECTION - GB:PRODUCT putative peptidase GB:PROTEIN_ID BAD56946.1 LENGTH 408 SQ:AASEQ MTFDALWDSIRAIGRHPGTGGYRRFAWTDADLTLREWFTGCATQRGMDVEQDRNGNLWAWWLPPGHTGEPRDAFVTGSHLDSVPDGGAYDGPLGVVSAFAAVDLLRERGTVPARPVAVTAFSDEEGARFGVACVGSQLSTGALAPARALGLRDADGITLAEALTAAGREPRHLGPDPALTERVGVFVELHVEQGRALDLVDRPVAVASSIWPHGRWLFRFTGEANHAGATRLADRHDPMLAFAASVHSARQAAQLHDAVATFGKLRVLPNGANAIPSEVLAWLDARAADEITLDALVTHIAEAARKHAEADGVTVDLETESLTPIVEFPAGPRARITRALSRLGEIPVLPTAAGHDAGILSARVPTAMLFVRNPTGISHSPAEYATPEDCRTGARALADVMGEWVAAG GT:EXON 1|1-408:0| BL:SWS:NREP 1 BL:SWS:REP 4->397|AMAB1_BACST|4e-47|35.0|386/409| SEG 141->155|galaparalglrdad| BL:PDB:NREP 1 BL:PDB:REP 10->398|1z2lB|3e-43|31.6|377/410| RP:PDB:NREP 1 RP:PDB:REP 4->404|3dljB|4e-24|10.7|401/467| HM:PFM:NREP 1 HM:PFM:REP 76->401|PF01546|3.8e-24|29.0|138/171|Peptidase_M20| RP:SCP:NREP 1 RP:SCP:REP 4->296|1z2lA1|2e-42|25.2|278/293|c.56.5.4| HM:SCP:REP 1->404|1r3nA1|1.6e-63|36.9|287/323|c.56.5.4|1/1|Zn-dependent exopeptidases| OP:NHOMO 656 OP:NHOMOORG 376 OP:PATTERN -------11111111---------1-----2------------------------------------- --3111-------------------4----------1-11----2-------11-1-1--11111-11111-----------4---------------------11---------------------------------------------------111--1---------------------11-------1---------------4122-1---21122--11111122---------------2----1------1-------------1----------------------------------------------------111111-1----111-----2--------21---------------1-1111--------424--11111--1111111111-2252131534--62242313331242---11432331232222222233311--------------------------------------16523455554-222255533332225434365--11-1131243522313------------------------------1----------------------11--------------------------11--111-1----------------------1--1------1-21--21111111111-1-1111111111111111-32511--11-111-11111111112---111---111111111111---1------------22---1-1--1-1---1-----------111111322-2521-1-1-------------------1------11111-1-------1-----------------------------------------------------3-- ---------------21213222222111-1111111111111111--111222111-----112-13-1--2-1-----211111---1--1-----1---1-------------------------------------------------------1--------------1--22-O---133242222------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 407 STR:RPRED 99.8 SQ:SECSTR EcHHHHHHHHHHHHTcccccccccHHHHHHHHHHHHHHHHHHHHTTcEEEEEcccEEEccEEEcccccTTccEEEEEEEcccccccTTTTTHHHHHHHHHHHHHHHHTTcccccEEEEEEEccGGGTcTTHHHHHHHTTTTTTTTccEEEEcccccccccEEEEEEcEEEEcccccETTTTccccHHHHHHHHHTTcccTTcccccTTTTTTcccccHHHHHHHHTccccHHHHHHHHTccccccccHHHHHTccEEEEEEEEccccccccccEEccEEEEEEEEEEcTTccHHHHHHHHHHHHHHHHHTTTcccEEEEEEEEEEccEEcccccGGGHHHHHHHHEEEEEccccHHHHHHHHHHcccEEEcccTTccTTcTTcEEEHHHHHHHHHHHHHHHHHHHcc# PSIPRED ccHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHcccEEEEEccccEEEEEcccccccccccEEEEEEEccccccccccccHHHHHHHHHHHHHHHHccccccccEEEEEEEcccccccccHHccHHHHcccccHHHHHHHHccccccHHHHHHHccccHHHHHHHcccccccEEEEEEEEcccccHHcccccccccccEEEEEEEEEEEEEEccccccccccccccHHHHHHHHHHHHHHHccccccEEEEEEEEEccccccEEccEEEEEEEEEcccHHHHHHHHHHHHHHHHHHHHHHccEEEEEEEcccccccccHHHHHHHHHHHHHHccccEEEcccHHHHHHHHHcccEEEEEEcccccccccHHHcccHHHHHHHHHHHHHHHHHHHccc //