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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD56956.1
DDBJ      :             putative ammonium transporter
Swiss-Prot:             

Homologs  Archaea  33/68 : Bacteria  627/915 : Eukaryota  131/199 : Viruses  0/175   --->[See Alignment]
f.44.1
:450 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   22->416 2nuuD PDBj 8e-48 43.1 %
:RPS:PDB   20->416 2b2fA PDBj 4e-61 34.0 %
:RPS:SCOP  23->397 1u77A  f.44.1.1 * 5e-57 33.3 %
:HMM:SCOP  3->397 1u7gA_ f.44.1.1 * 4.7e-105 49.5 %
:RPS:PFM   20->413 PF00909 * Ammonium_transp 2e-52 40.8 %
:HMM:PFM   11->416 PF00909 * Ammonium_transp 7.1e-118 44.6 390/399  
:BLT:SWISS 20->416 AMT_MYCTU 8e-80 48.0 %
:PROS 233->247|PS00211|ABC_TRANSPORTER_1
:PROS 173->198|PS01219|AMMONIUM_TRANSP
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD56956.1 GT:GENE BAD56956.1 GT:PRODUCT putative ammonium transporter GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 2281795..2283147 GB:FROM 2281795 GB:TO 2283147 GB:DIRECTION + GB:PRODUCT putative ammonium transporter GB:PROTEIN_ID BAD56956.1 LENGTH 450 SQ:AASEQ MTEAIAAANTAWILAAFAAVSLMVPGLAMFYGGMVSIKNTLNMAMMTFGAFAVVGVLWILFGYSAVLGDSLGGLGLLGDPLEFLGSAQLLAAPAEPALPPALVSGFQLLFAAITVALISGAVADRMKFGAWMLFAGVWAALVYFPVAHWVFAFDSADGAVAGGWIANTLKAVDFAGGTAVHINAGIAALALVLVLGKRSTFPNPPRPHSLPLTMLGSGILFFGWFGFNGGSALAAGNSAAVVVLNTIAAACAGVCAWLLVEKLETGRATSLGASSGLIAALVGITPACGAVAPIGALLIGALAGGVCCLAVSLKYRFGVDDSLDVVGIHLVAGVLGTVLIGFLADPAAPNGVAGLFYGGGLDVLWRQIVAVLAVLAYTFVVTVVIAKAVDLTMGLRVPAEHERDGLDLTTHGETAYVVESVTVATPAPAPAEAVAAAESITADAAKAGVD GT:EXON 1|1-450:0| BL:SWS:NREP 1 BL:SWS:REP 20->416|AMT_MYCTU|8e-80|48.0|396/477| PROS 233->247|PS00211|ABC_TRANSPORTER_1|PDOC00185| PROS 173->198|PS01219|AMMONIUM_TRANSP|PDOC00937| TM:NTM 11 TM:REGION 10->32| TM:REGION 50->72| TM:REGION 100->122| TM:REGION 129->151| TM:REGION 174->196| TM:REGION 210->228| TM:REGION 238->260| TM:REGION 270->289| TM:REGION 295->314| TM:REGION 324->346| TM:REGION 367->389| SEG 4->19|aiaaantawilaafaa| SEG 67->85|lgdslgglgllgdpleflg| SEG 87->102|aqllaapaepalppal| SEG 184->196|agiaalalvlvlg| SEG 228->245|nggsalaagnsaavvvln| SEG 289->310|gavapigalligalaggvccla| SEG 417->447|vvesvtvatpapapaeavaaaesitadaaka| BL:PDB:NREP 1 BL:PDB:REP 22->416|2nuuD|8e-48|43.1|376/410| RP:PDB:NREP 1 RP:PDB:REP 20->416|2b2fA|4e-61|34.0|374/391| RP:PFM:NREP 1 RP:PFM:REP 20->413|PF00909|2e-52|40.8|375/395|Ammonium_transp| HM:PFM:NREP 1 HM:PFM:REP 11->416|PF00909|7.1e-118|44.6|390/399|Ammonium_transp| GO:PFM:NREP 4 GO:PFM GO:0006810|"GO:transport"|PF00909|IPR001905| GO:PFM GO:0008519|"GO:ammonium transmembrane transporter activity"|PF00909|IPR001905| GO:PFM GO:0016020|"GO:membrane"|PF00909|IPR001905| GO:PFM GO:0055085|"GO:transmembrane transport"|PF00909|IPR001905| RP:SCP:NREP 1 RP:SCP:REP 23->397|1u77A|5e-57|33.3|360/383|f.44.1.1| HM:SCP:REP 3->397|1u7gA_|4.7e-105|49.5|380/383|f.44.1.1|1/1|Ammonium transporter| OP:NHOMO 1254 OP:NHOMOORG 791 OP:PATTERN ---1--1111111111-1-1---2----1---112-----11-2221211332--------1----22 221121-222211122211-12--2211111122222333121111--1111233111--111-1-121211111111--1-111212---11--------1-1113-11---------------2312122112211-11111313122--3-12211-2112121222211-11111211121111---111--1-1111-111111112211111-1--11111111113-11111111111111-1111-1111111-1-111111-1-1111111111----11---------------------------111----11-13------------22------1--1111111311---1111-2---1121111-----123221-1121-111111111111-22121121111-11111111111111112-21111111-1111111122211111-----------------------------222111111-11112111111111111111111111111-111141-112211111211212121111111---121-323-222122112-222111223221312111--1----------------11121221-11-2111111222211222211111112------1------11112111111111111-1111111111111111111111111111111111111111111111111111-111111111111-------------32112------------11-1111112---1111111112112111222---------11111-11111111111111111111111113-221122---------------------------------222-11--1-11111- ----213-----1124352433333331111111112222221111132235441332234363223212314322323323342313-24234392121222445-2923--------------------------------------------------2-2---111-4372-454j3332-85975433444662 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 397 STR:RPRED 88.2 SQ:SECSTR ###################HHHHHHHHHHHHHTTccGGGHHHHHHHHHHHHHHHHHHHHHTHHHHHHcccccccHHHccEETTTEEccTTGGGTTccTHHHHHHHHHHHHHHHHHHHHGGGGTTTccHHHHHHHHHHHHHHTHHHHHHHHHcccTTHHTTcccHHHHGTTccccccTTTTHHHHHHHHHHHHHHHcccTTTTcccccccHHHHHHHHHHHHHHHHHHHHGGGccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHTTTTTTccHHHHHHHHHHHHHHHHHHHHHHHHTTcccTTcHHHHHHHHHHHHHHHHHHHccHHHccHccccGGGTcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTcccccHHHHHHcHHHHHHccccc################################## DISOP:02AL 200-206, 208-209, 423-445| PSIPRED ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccccEEEEccccHHHHHHHHHHHHHccEEEEcccHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHcccccccccccEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHcccHHHHcccccccHHcccccccccccccccccccccHHHHHcccc //