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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD56957.1
DDBJ      :             putative DNA-binding protein
Swiss-Prot:             

Homologs  Archaea  5/68 : Bacteria  129/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
a.35.1b.82.1
:204 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   19->77 1b0nA PDBj 4e-07 39.0 %
:RPS:PDB   19->201 2axuG PDBj 3e-17 11.6 %
:RPS:SCOP  15->87 1y9qA1  a.35.1.8 * 8e-14 30.1 %
:RPS:SCOP  100->202 1sq4A  b.82.1.11 * 2e-08 13.0 %
:HMM:SCOP  9->85 2b5aA1 a.35.1.3 * 1.4e-13 33.8 %
:HMM:SCOP  82->196 2bnmA2 b.82.1.10 * 4.8e-22 37.7 %
:RPS:PFM   23->77 PF01381 * HTH_3 1e-06 36.4 %
:HMM:PFM   23->75 PF01381 * HTH_3 1.8e-14 39.6 53/55  
:HMM:PFM   129->181 PF07883 * Cupin_2 2.7e-09 28.8 52/71  
:BLT:SWISS 14->98 YDCN_ECOLI 1e-09 32.9 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD56957.1 GT:GENE BAD56957.1 GT:PRODUCT putative DNA-binding protein GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(2283196..2283810) GB:FROM 2283196 GB:TO 2283810 GB:DIRECTION - GB:PRODUCT putative DNA-binding protein GB:PROTEIN_ID BAD56957.1 LENGTH 204 SQ:AASEQ MQREVVGEPPTGGDLEAAIARQVRALRRAAGLSVAEMAAKVGISKAMLSKIENAQTSCSLSTVARLAAGLDVPVTSLFRGADSAREAVYVPAGSGAVIVGRGTRVGHHYELLGSLRGQHKRLEPVLVTLTESSEVFPRFQHAGTELLYMLEGVMVYGHGDAEYTLRPGDSLLLDGEGIHGPNDLVRLPIRFLAVTAYPDNHEET GT:EXON 1|1-204:0| BL:SWS:NREP 1 BL:SWS:REP 14->98|YDCN_ECOLI|1e-09|32.9|85/178| BL:PDB:NREP 1 BL:PDB:REP 19->77|1b0nA|4e-07|39.0|59/103| RP:PDB:NREP 1 RP:PDB:REP 19->201|2axuG|3e-17|11.6|181/299| RP:PFM:NREP 1 RP:PFM:REP 23->77|PF01381|1e-06|36.4|55/55|HTH_3| HM:PFM:NREP 2 HM:PFM:REP 23->75|PF01381|1.8e-14|39.6|53/55|HTH_3| HM:PFM:REP 129->181|PF07883|2.7e-09|28.8|52/71|Cupin_2| GO:PFM:NREP 1 GO:PFM GO:0043565|"GO:sequence-specific DNA binding"|PF01381|IPR001387| RP:SCP:NREP 2 RP:SCP:REP 15->87|1y9qA1|8e-14|30.1|73/79|a.35.1.8| RP:SCP:REP 100->202|1sq4A|2e-08|13.0|100/270|b.82.1.11| HM:SCP:REP 9->85|2b5aA1|1.4e-13|33.8|77/0|a.35.1.3|1/1|lambda repressor-like DNA-binding domains| HM:SCP:REP 82->196|2bnmA2|4.8e-22|37.7|114/0|b.82.1.10|1/1|RmlC-like cupins| OP:NHOMO 174 OP:NHOMOORG 134 OP:PATTERN ---------------------------------1------11------1---1--------------- ---------------11----1--11-----111112-11-1---1------111----------1--1-----------211----------------------1-1----------------------------111----------------11------------------------------------------11----------------1-1--1---------1-----------------------------------------------------------------------------------------------1111111-1--1--------1--1----22-1----1---------------------1211--3---1-------------21-12111-1--21111111112221---1------4-2------------1--------------------------------------1------------------2-------11--41----11------1-B111--1-1-------------1---2---11-1-111-222122311-------1---------------------------------------------------------------1-----------------------------------------------------------------------------1--------------------------------------------------1-----11-1---11-2---111---------1--------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 195 STR:RPRED 95.6 SQ:SECSTR #########ccccHHHHHHHHHHHHHHHHHTccHHHHcTTHTTcHHHHHHHHTTcccccHHHHHHHHHHHTccHHHHHHTTTccccHHHHHTTTcHHHHccTTTHHHHTTccTTcHHHHHHHHHHHHHHHHTTcccTTcTTTHHHHHHHHTTTcccccHHHHHHHHHHHHcccHHHHHHHHGGccccccccHHHHHHHHHHccc DISOP:02AL 1-16, 132-137, 200-204| PSIPRED cccccccccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHcccHHHHHHHHcccccccHHHHHHHHHHHcccHHHHHHHHHcccccEEEEcccccccccccccccEEEEEEEcccccccEEEEEEccccccccccccccccccEEEEEEEEEEEEEEccEEEEEccccEEEEcccccEEEEEcccccEEEEEEEEcccccccc //