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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD56959.1
DDBJ      :             putative transcriptional regulator
Swiss-Prot:             

Homologs  Archaea  23/68 : Bacteria  393/915 : Eukaryota  3/199 : Viruses  0/175   --->[See Alignment]
a.4.5c.67.1
:463 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   27->96 2di3B PDBj 2e-06 34.3 %
:BLT:PDB   241->430 1x0mA PDBj 1e-13 28.4 %
:RPS:PDB   21->87 3by6D PDBj 4e-13 32.8 %
:RPS:PDB   100->440 5bj4A PDBj 4e-17 13.8 %
:RPS:SCOP  21->87 1e2xA1  a.4.5.6 * 7e-14 29.9 %
:RPS:SCOP  108->462 1vp4A  c.67.1.1 * 4e-21 20.2 %
:HMM:SCOP  18->91 1hw1A1 a.4.5.6 * 4.9e-15 43.2 %
:HMM:SCOP  72->462 1x0mA1 c.67.1.1 * 1.6e-65 28.9 %
:RPS:PFM   27->82 PF00392 * GntR 1e-06 48.2 %
:RPS:PFM   141->328 PF00155 * Aminotran_1_2 2e-04 29.3 %
:HMM:PFM   25->84 PF00392 * GntR 4.2e-18 45.0 60/64  
:HMM:PFM   123->410 PF00155 * Aminotran_1_2 1.1e-16 20.4 285/363  
:BLT:SWISS 21->414 MOCR_RHIME 1e-39 31.5 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD56959.1 GT:GENE BAD56959.1 GT:PRODUCT putative transcriptional regulator GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 2284453..2285844 GB:FROM 2284453 GB:TO 2285844 GB:DIRECTION + GB:PRODUCT putative transcriptional regulator GB:PROTEIN_ID BAD56959.1 LENGTH 463 SQ:AASEQ MAEQWAISGVDLHLERTGPGLRRGLTDALREAVRTGRLGAGTRLPSSRTLAADLGIARNTVAAVYADLVAEGWLTARQGAGTRVAERRVSAPDGAVPPPRTHPRPRYDLRPGRPDVSAFPRGDWLKAARRAVAAAPHESFGYGDPGGRPDLRAALAGYLARARGVRAESRRVVIDGGFAHTLTVLGAVLRARGVHTVAVESYGLRAHRNLLAASGLRTVALPYDDRGTDPGPLPVTGAGAVLLTPAHQFPMGEALPPERRTAVVDWARRTGGLVIEDDYDGEFRYDRRPVGALQGLAPDRVVYLGTASKSLAPGLRLSWAVLPGDLVDDVVAARGGHDVCGVLDQLTLAEFLRSGAYDRHVRTARLRYRRRRDALVAALATHAPDVRVTGIAAGLHAVVRLPPGAEEQVLRSAAWHGLALLGLSLFRHPDAVAEQLDAVVVGYGTPPDHAWSGALDTLSRVLP GT:EXON 1|1-463:0| BL:SWS:NREP 1 BL:SWS:REP 21->414|MOCR_RHIME|1e-39|31.5|391/493| SEG 127->135|aarravaaa| SEG 151->167|lraalagylarargvra| SEG 359->380|rhvrtarlryrrrrdalvaala| BL:PDB:NREP 2 BL:PDB:REP 27->96|2di3B|2e-06|34.3|70/230| BL:PDB:REP 241->430|1x0mA|1e-13|28.4|190/403| RP:PDB:NREP 2 RP:PDB:REP 21->87|3by6D|4e-13|32.8|67/121| RP:PDB:REP 100->440|5bj4A|4e-17|13.8|334/366| RP:PFM:NREP 2 RP:PFM:REP 27->82|PF00392|1e-06|48.2|56/64|GntR| RP:PFM:REP 141->328|PF00155|2e-04|29.3|188/341|Aminotran_1_2| HM:PFM:NREP 2 HM:PFM:REP 25->84|PF00392|4.2e-18|45.0|60/64|GntR| HM:PFM:REP 123->410|PF00155|1.1e-16|20.4|285/363|Aminotran_1_2| GO:PFM:NREP 6 GO:PFM GO:0003700|"GO:transcription factor activity"|PF00392|IPR000524| GO:PFM GO:0005622|"GO:intracellular"|PF00392|IPR000524| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF00392|IPR000524| GO:PFM GO:0009058|"GO:biosynthetic process"|PF00155|IPR004839| GO:PFM GO:0016769|"GO:transferase activity, transferring nitrogenous groups"|PF00155|IPR004839| GO:PFM GO:0030170|"GO:pyridoxal phosphate binding"|PF00155|IPR004839| RP:SCP:NREP 2 RP:SCP:REP 21->87|1e2xA1|7e-14|29.9|67/73|a.4.5.6| RP:SCP:REP 108->462|1vp4A|4e-21|20.2|352/420|c.67.1.1| HM:SCP:REP 18->91|1hw1A1|4.9e-15|43.2|74/0|a.4.5.6|1/1|"Winged helix" DNA-binding domain| HM:SCP:REP 72->462|1x0mA1|1.6e-65|28.9|384/0|c.67.1.1|1/1|PLP-dependent transferases| OP:NHOMO 1107 OP:NHOMOORG 419 OP:PATTERN --11111----------111111---------------------1--1------1111121111---- 1221811-111---2------1---4------21113363111224--2121122311--112132442311---11113-42----------1-------1---3-4--------------------1----------13---12---------------------111-------------323-------433333324234333423533633311-5111------E311111111111111111113----11-----22--111-----------------------------------------------------31-35555555141-2------5---1121--33-1-----------1-1--1--1-------533-1-21121----------3-1-1-2212141-2------222111-1--3152-13226-------------112--------------------------------1-166438DCBBAG78886BBAC999938D977796--56522-11A2346424--2-121---------122--1--11121--433-312------221225--1-----------------------1--112-111---2-2111------1----1-1---1-1-------2343143-111-111---1---1-1-1-111-----266665---1-222121111111216--1------411111111111---------------223111---1-------13323221-1-1144546655677781222-------------1-----111111--2-22-----------------------------------------------------1-2-1------2- -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------2-----------2--1---------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 450 STR:RPRED 97.2 SQ:SECSTR ############cHTTccccHHHHHHHHHHHHHHTTcccTTcEEccHHHHHHHHTccHHHHHHHHHHHHHTTcEEEETTTEEEEcHHHccHHHHHcccccccccccEEcccccccccccHHHHHHHHHHHHHHHHHTTccccccTTccHHHHHHHHHHHHHTTcccccGGGEEEEcHHHHHHHHHHHHHccTTHcEEEEEEcccTHHHHHHHHTTcEEEEEEccGGGTTcccHHccTTEEEEEEEcccTTTcccccHHHHHHHHHHHHHHTcEEEEEcTTTTcccccccccGGGTcTTTEEEEEEcTTTTTcGGGccEEEEccHHHHHHHHHHHHTTTcccHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHGHHTccccccccTTEEEEEcTTTccHHHHHHHHHTTEEcEEcGGGTcTTEEHHHHHHHHEccccccHHHHHHHHHHHHHHH# DISOP:02AL 1-2, 89-103| PSIPRED ccccccccccccccccccccHHHHHHHHHHHHHHccccccccccccHHHHHHHHcccHHHHHHHHHHHHHccEEEEEccccEEEccccccccccccccHHHcccccEEccccccccccccHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHcccccccccEEEcccHHHHHHHHHHHHccccccEEEEEcccHHHHHHHHHHcccEEEEEccccccccHHHHHHccccEEEEEccccccccccccHHHHHHHHHHHHHcccEEEEEcccccccccccccccHHHHccccEEEEccHHHHHHHHHcEEEEEccHHHHHHHHHHHHHHccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEcccccEEEEEEccccHHHHHHHHHHHcccEEEEccHHcccccccccccEEEEEEccccHHHHHHHHHHHHHHcc //