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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD56964.1
DDBJ      :             putative DNA-binding protein
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  80/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
a.35.1
:277 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:RPS:PDB   29->63 2axvB PDBj 9e-05 12.1 %
:RPS:SCOP  29->63 1b0nA2  a.35.1.3 * 1e-04 40.0 %
:HMM:SCOP  29->74 1b0nA2 a.35.1.3 * 7.6e-05 46.5 %
:HMM:PFM   34->74 PF01381 * HTH_3 2e-10 47.5 40/55  
:BLT:SWISS 22->63 Y4DJ_RHISN 6e-04 51.2 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD56964.1 GT:GENE BAD56964.1 GT:PRODUCT putative DNA-binding protein GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(2289518..2290351) GB:FROM 2289518 GB:TO 2290351 GB:DIRECTION - GB:PRODUCT putative DNA-binding protein GB:PROTEIN_ID BAD56964.1 LENGTH 277 SQ:AASEQ MTANRFAEFLVARRAELRPADVGLPEAGRRRTPGLRREEVAVRAGVSVDYLARLEQGRDTNPSLAVVDALADALLLDEAQRQHFGLLALTAGKEDRCPGAAAATTAVPETVRTVVRALDPTPAFVLGRGLDVLGHNDAWAELVAPLGLLDPPNNLAHWVFRHEDARRVLRNRAAVADGVAAALYRATMRWPADERLRRAVTELRAVPEFARRWQPRLAADQPPAPLRLDHPVHGALTLTAETLETQRDQTVVVWLPDRALPREPGLRLIRTAGEASA GT:EXON 1|1-277:0| BL:SWS:NREP 1 BL:SWS:REP 22->63|Y4DJ_RHISN|6e-04|51.2|41/100| SEG 64->79|lavvdaladallldea| SEG 100->117|aaaattavpetvrtvvra| SEG 165->182|arrvlrnraavadgvaaa| SEG 235->245|altltaetlet| RP:PDB:NREP 1 RP:PDB:REP 29->63|2axvB|9e-05|12.1|33/303| HM:PFM:NREP 1 HM:PFM:REP 34->74|PF01381|2e-10|47.5|40/55|HTH_3| RP:SCP:NREP 1 RP:SCP:REP 29->63|1b0nA2|1e-04|40.0|35/68|a.35.1.3| HM:SCP:REP 29->74|1b0nA2|7.6e-05|46.5|43/0|a.35.1.3|1/1|lambda repressor-like DNA-binding domains| OP:NHOMO 178 OP:NHOMOORG 80 OP:PATTERN -------------------------------------------------------------------- ----D--1112---1------1---C------23333231-324513--1--353--3--22--C-4592--------------------------------------------------------------------------1------------------------------------------------2-------------------------------------13----------------------------------------------------------------------------------------------2------------------------------------------------1--------111-----2-------------------------1--1---11-122-----1------------------------------------------------------------------2122121-----11-1------1--1-----11-------------1--------------------------------------------------------------------------------------1-----------1-------------------------11---------------------------------111-1-------------------1-------------------------------------1------------------------------------1--------------------------------11----------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 35 STR:RPRED 12.6 SQ:SECSTR ############################HHHHHTccHHHHHHTTTccHHHHHHHHTTcccccc###################################################################################################################################################################################################################### DISOP:02AL 1-3, 93-104, 275-277| PSIPRED ccHHHHHHHHHHHHcccccHHcccccccccccccccHHHHHHHHcccHHHHHHHHccccccccHHHHHHHHHHHcccHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHccccEEEEccccHHHHHHHHHHHHcccccccccccccHHHHHccHHHHHHHccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHccHHHHHHHHHccccccccccEEEEcccEEEEEEEEEEcccccccEEEEEEccccccHHHHHHHHHHHHHccc //