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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD56968.1
DDBJ      :             putative ABC transporter permease
Swiss-Prot:             

Homologs  Archaea  26/68 : Bacteria  516/915 : Eukaryota  3/199 : Viruses  0/175   --->[See Alignment]
f.58.1
:262 amino acids
:SECSTR
:PSIPRED
:RPS:PDB   158->197 3dhwA PDBj 6e-07 27.5 %
:RPS:SCOP  109->247 2r6gG1  f.58.1.1 * 9e-12 17.3 %
:HMM:PFM   90->255 PF00528 * BPD_transp_1 1.5e-23 29.5 166/185  
:BLT:SWISS 109->247 CMPB_SYNP6 8e-25 40.6 %
:PROS 167->182|PS00063|ALDOKETO_REDUCTASE_3
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD56968.1 GT:GENE BAD56968.1 GT:PRODUCT putative ABC transporter permease GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(2293323..2294111) GB:FROM 2293323 GB:TO 2294111 GB:DIRECTION - GB:PRODUCT putative ABC transporter permease GB:PROTEIN_ID BAD56968.1 LENGTH 262 SQ:AASEQ MTITTAPDTAPAVAQRPSVLPRLLAIAAALALWWLVTGVLAGPESLLRDFGPQHVPGALHALHERGVLLPDIGVSLWRLVLGLLIAVTVGVPLGLLLGLHAATEHALAPVVQFLRMISPLSWAPIAVALFGIGNQPVVFLVAAAAVWPIVLNTAAGVRAIDPGLLLVARSFGATRREQLTAVVLPAVRGPVQSGLRIALGIAWVVLVPAEMLGVRSGLGYQILNARDQLAYDQVMAVIVVIGALGFVLDGLARALLDRRQPG GT:EXON 1|1-262:0| BL:SWS:NREP 1 BL:SWS:REP 109->247|CMPB_SYNP6|8e-25|40.6|138/278| PROS 167->182|PS00063|ALDOKETO_REDUCTASE_3|PDOC00061| TM:NTM 6 TM:REGION 20->42| TM:REGION 72->94| TM:REGION 108->130| TM:REGION 135->157| TM:REGION 187->209| TM:REGION 228->250| SEG 23->35|llaiaaalalwwl| SEG 86->108|avtvgvplglllglhaatehala| SEG 248->259|ldglaralldrr| RP:PDB:NREP 1 RP:PDB:REP 158->197|3dhwA|6e-07|27.5|40/203| HM:PFM:NREP 1 HM:PFM:REP 90->255|PF00528|1.5e-23|29.5|166/185|BPD_transp_1| RP:SCP:NREP 1 RP:SCP:REP 109->247|2r6gG1|9e-12|17.3|139/284|f.58.1.1| OP:NHOMO 1641 OP:NHOMOORG 545 OP:PATTERN ----1------------------1----1---11-1111111132221122221------------11 -1--2--1113---333----1---B------14447483-31331---11-514111--11--2243142-111---1--11----1-----111----------------------------11---1----------1---22113322323341-----2313532-1------------11-----1-12222223322222236111-12211-113--------28-11111111111111----11---12---------321--12111111111-1122-----------1111111111111111---1111113271111211-1-2377-----241-3----7613212--41111-11--2111------46FHR-34822A422222221224-DCCBAAB9552-G77553634655DA1--31415222-232333333111-33-1-----------------------------1--1-14DB9538898332332776733332265MB7B7-2774256246654HC161153511-------11-1331251111-211--1127--2-31-222229141211----------------11-1---2-21121-1-1-----------------------311------6564-443333322233-333333332332333333369688111111111111111111142233233--244444424444--------------2221-----1-111-1---5554512---A697588765458453765---------3---------11-111-31111----------3-------------------------------------------11---1-2---1 -------------------------------------------------------------------------------------------------------------------------------------------------------------------2---------------------2--2---------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 40 STR:RPRED 15.3 SQ:SECSTR #############################################################################################################################################################HHccTTTTTHHHHHTccTHHHHHHTTHHHHHHHHHHHHHH################################################################# PSIPRED cccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc //