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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD56971.1
DDBJ      :             hypothetical protein
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  48/915 : Eukaryota  1/199 : Viruses  0/175   --->[See Alignment]
e.6.1
:344 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:RPS:PDB   55->215 2d29A PDBj 2e-06 13.8 %
:RPS:SCOP  55->205 1r2jA2  e.6.1.1 * 3e-07 23.1 %
:HMM:SCOP  6->205 1r2jA2 e.6.1.1 * 5.8e-19 27.3 %
:HMM:PFM   7->100 PF02771 * Acyl-CoA_dh_N 0.00013 28.0 93/113  
:HMM:PFM   75->134 PF03450 * CO_deh_flav_C 0.00046 27.1 59/103  
:HMM:PFM   224->328 PF00441 * Acyl-CoA_dh_1 2.7e-05 31.4 105/150  
:HMM:PFM   162->193 PF05703 * DUF828 0.00085 40.6 32/243  
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD56971.1 GT:GENE BAD56971.1 GT:PRODUCT hypothetical protein GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(2295963..2296997) GB:FROM 2295963 GB:TO 2296997 GB:DIRECTION - GB:PRODUCT hypothetical protein GB:PROTEIN_ID BAD56971.1 LENGTH 344 SQ:AASEQ MTAVLTARTEAAAFVRDRAAALDRGETDVRTDLAALGDLGLLGIGLGERGIGEIVAVIEDVAAESLTVAFSLWAQRMTIEYVARAPEPVRRAHLGGLVSGRTVGVTAMAAALKHLAGLGELPLAGVRDSDRYRVTGPIAWASNVFPDALIVFPFRDEQGCGRVACTRADAAGVEVRPCPELLALGATASTSLRFTDVTVPAAQCLTADLPAFGAAIRPTFLLLQSAFCTGIARTALAESAGLLDGIGAQFRTDHDALATRHADVRARLHAYAADPAAPDGAALLTVRLDAARLAVDATRLEFALRGGAGYATAGATNRRFREAAFLPIQSPSEGQLRWELSRYR GT:EXON 1|1-344:0| SEG 11->24|aaafvrdraaaldr| SEG 32->53|dlaalgdlgllgiglgergige| SEG 181->192|llalgatastsl| SEG 265->283|rarlhayaadpaapdgaal| SEG 306->316|ggagyatagat| RP:PDB:NREP 1 RP:PDB:REP 55->215|2d29A|2e-06|13.8|160/386| HM:PFM:NREP 4 HM:PFM:REP 7->100|PF02771|0.00013|28.0|93/113|Acyl-CoA_dh_N| HM:PFM:REP 75->134|PF03450|0.00046|27.1|59/103|CO_deh_flav_C| HM:PFM:REP 224->328|PF00441|2.7e-05|31.4|105/150|Acyl-CoA_dh_1| HM:PFM:REP 162->193|PF05703|0.00085|40.6|32/243|DUF828| RP:SCP:NREP 1 RP:SCP:REP 55->205|1r2jA2|3e-07|23.1|147/209|e.6.1.1| HM:SCP:REP 6->205|1r2jA2|5.8e-19|27.3|198/210|e.6.1.1|1/1|Acyl-CoA dehydrogenase NM domain-like| OP:NHOMO 50 OP:NHOMOORG 49 OP:PATTERN -------------------------------------------------------------------- -------11-----111-------11-----1----1------------------1-----------------------------------------------------------------------------------------1------1---1---------------------------------------------------------------------------------------------------------------------------------1--------------------------1-------------------------------------------------------------------------111--------------------11-11-------------------11-------------------------1--------------------------------------------1111------------------2--------------1-1-------1----1111111--------------------------------------------------------------------------------------------------------------------------------------------------1-------------------------------------------------------------------------1----------------1--11---111------------------------------------------------------------------------------------------------------ --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1---------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 185 STR:RPRED 53.8 SQ:SECSTR ######################################################HHHHHHHHHHcHHHHHHHHHHHHTHHHHHHHcHHHHHHHHHHHHTccccEEEEcccTTcccccGGGcccEEEEETTEEEEEEEEEEEETTTccEEEEEcGGGTTTTEEEEEEEcccccEEEcccccccccTTccEEEEEEEEEEEEGGGEEccTTcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH######################################################################################################### DISOP:02AL 344-345| PSIPRED ccHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHccccccccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHcccEEEEEEEcccccccccccccEEEEEEEccEEEEEEEEEEEEcccccEEEEEEEEcccccEEEEEEEcccccEEEEccccccccccccEEEEEEccEEccHHHHcccccHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHccEEccccHHHHHHHHHHHcc //