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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD56974.1
DDBJ      :             putative transcriptional regulator
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  170/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
a.121.1a.4.1
:201 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   21->178 3g7rB PDBj 3e-23 39.5 %
:RPS:PDB   28->187 3bt9B PDBj 2e-13 11.9 %
:RPS:SCOP  28->88 1jt0A1  a.4.1.9 * 2e-11 23.0 %
:RPS:SCOP  96->187 1sgmA2  a.121.1.1 * 3e-08 19.6 %
:HMM:SCOP  14->102 1t33A1 a.4.1.9 * 2e-16 39.8 %
:HMM:SCOP  96->200 1sgmA2 a.121.1.1 * 3.8e-11 35.2 %
:HMM:PFM   30->75 PF00440 * TetR_N 5e-15 41.3 46/47  
:HMM:PFM   68->106 PF03259 * Robl_LC7 0.00068 39.5 38/91  
:BLT:SWISS 20->165 Y1255_MYCTU 2e-09 33.1 %
:PROS 39->49|PS00639|THIOL_PROTEASE_HIS
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD56974.1 GT:GENE BAD56974.1 GT:PRODUCT putative transcriptional regulator GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 2297738..2298343 GB:FROM 2297738 GB:TO 2298343 GB:DIRECTION + GB:PRODUCT putative transcriptional regulator GB:PROTEIN_ID BAD56974.1 LENGTH 201 SQ:AASEQ MRYRGAVTTSTETVATSADRRTRPSPAQRLLDTATTLFARHGIRAVGIDRVLAEAGVARASLYSSYGSKDGLVLAYLEHLDHRDRERWHAAVADLADPADRVLAFFDLALASAPGKGFRGCQYANAATEFPEQALAPVIEHRRWVRATLTALLAECGAAEPDELARRIQLIYDGALAGSKLEHSVEPLRLGRALAEGLLGR GT:EXON 1|1-201:0| BL:SWS:NREP 1 BL:SWS:REP 20->165|Y1255_MYCTU|2e-09|33.1|145/202| PROS 39->49|PS00639|THIOL_PROTEASE_HIS|PDOC00126| SEG 6->18|avttstetvatsa| SEG 188->200|lrlgralaegllg| BL:PDB:NREP 1 BL:PDB:REP 21->178|3g7rB|3e-23|39.5|157/199| RP:PDB:NREP 1 RP:PDB:REP 28->187|3bt9B|2e-13|11.9|160/186| HM:PFM:NREP 2 HM:PFM:REP 30->75|PF00440|5e-15|41.3|46/47|TetR_N| HM:PFM:REP 68->106|PF03259|0.00068|39.5|38/91|Robl_LC7| RP:SCP:NREP 2 RP:SCP:REP 28->88|1jt0A1|2e-11|23.0|61/71|a.4.1.9| RP:SCP:REP 96->187|1sgmA2|3e-08|19.6|92/111|a.121.1.1| HM:SCP:REP 14->102|1t33A1|2e-16|39.8|88/0|a.4.1.9|1/1|Homeodomain-like| HM:SCP:REP 96->200|1sgmA2|3.8e-11|35.2|105/111|a.121.1.1|1/1|Tetracyclin repressor-like, C-terminal domain| OP:NHOMO 260 OP:NHOMOORG 170 OP:PATTERN -------------------------------------------------------------------- 1---411111211112111-1---1411111-1222114--1--21-1-1111-3-----11--32424--------------------------------2---2-1--------------------------------------3-1------------------11--------------------------------------------------------------1------------------------------------------------------------------------------------------------------------------------------------------------3---------2223---1--1-----------1---1--1---4--4---22232121-1---------1--1---------1---1-1--------------------------------1---11114334342222222122222123-11111--21-----11-2----1--3231--------111---------------------------1111-1------------------------------1---11---1-----1---1-------------1---------------------------------------------1-1-1111----------------1------------------------------------11----------------1111111-----1111-11121-211-----------------------1----1--1------------------------------------------------------------------1- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 169 STR:RPRED 84.1 SQ:SECSTR ##################HcccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHTccTTcTTcccccHHHHHHHHHHHHHHHHHHHHHHHGGGcccHHHHHHHHHHHHHHcccGGGHHHHHHHHTcccccccTTTTHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHTTTTccHHHH############## DISOP:02AL 1-29| PSIPRED cccccccccccccccccccccccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHcccccHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcc //