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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD56979.1
DDBJ      :             putative transporter
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  53/915 : Eukaryota  64/199 : Viruses  0/175   --->[See Alignment]
:454 amino acids
:PSIPRED
:DISOPRED
:RPS:PFM   274->384 PF00999 * Na_H_Exchanger 6e-08 32.7 %
:HMM:PFM   16->418 PF00999 * Na_H_Exchanger 1.1e-63 31.5 368/383  
:BLT:SWISS 10->125,274->385 KHA1_SCHPO 9e-15 33.9 %
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD56979.1 GT:GENE BAD56979.1 GT:PRODUCT putative transporter GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 2302661..2304025 GB:FROM 2302661 GB:TO 2304025 GB:DIRECTION + GB:PRODUCT putative transporter GB:PROTEIN_ID BAD56979.1 LENGTH 454 SQ:AASEQ MPSPLAISTLFFLQLVVILLAYRLLWPVLRRLGQVQVVAIMIAGFLLGPSLLGAAWPELQQRLFPTEVVLDGVTVPHPNATAIQVVGQLGLVLYMFLVGASFDRAILGGHLRQAGLTSATGVLVPMVLGGSVGWWLVGAGGYFTDAVSPWQGALFLAAAVAVTAFPILAWIVHDSGLTGTRLGTMALACAAVDDLCAWLLLAVVVATAQDSAGGAYLALAGGALYLAVMATAGRRLLTRLETWTPRRGDHETTGGLPVAPVVAVLLVVLAAAAFTDFVGIHSVLGAFVAGVVMPRGELLAGLRRAFEPLVAYLLLPAFFIHTGLSTELSLIFTPNVLAVTALVLVVSFASKFGAVGLVARAQGMGWREAGAMGALANARGLMELVLLGIGLSSGLITPALYTVLALMTTVTTVLATPLQRLFERGAWKRGMVFGPNGEQPPVREPADTAPSATT GT:EXON 1|1-454:0| BL:SWS:NREP 1 BL:SWS:REP 10->125,274->385|KHA1_SCHPO|9e-15|33.9|216/898| TM:NTM 11 TM:REGION 3->25| TM:REGION 35->57| TM:REGION 80->102| TM:REGION 116->138| TM:REGION 153->175| TM:REGION 186->208| TM:REGION 212->233| TM:REGION 262->284| TM:REGION 305->327| TM:REGION 335->357| TM:REGION 389->411| SEG 127->141|vlggsvgwwlvgagg| SEG 153->165|alflaaavavtaf| SEG 186->206|alacaavddlcawlllavvva| SEG 212->227|aggaylalaggalyla| SEG 256->273|lpvapvvavllvvlaaaa| SEG 336->346|vlavtalvlvv| SEG 386->396|llgiglssgli| SEG 399->418|alytvlalmttvttvlatpl| RP:PFM:NREP 1 RP:PFM:REP 274->384|PF00999|6e-08|32.7|110/379|Na_H_Exchanger| HM:PFM:NREP 1 HM:PFM:REP 16->418|PF00999|1.1e-63|31.5|368/383|Na_H_Exchanger| GO:PFM:NREP 4 GO:PFM GO:0006812|"GO:cation transport"|PF00999|IPR006153| GO:PFM GO:0015299|"GO:solute:hydrogen antiporter activity"|PF00999|IPR006153| GO:PFM GO:0016021|"GO:integral to membrane"|PF00999|IPR006153| GO:PFM GO:0055085|"GO:transmembrane transport"|PF00999|IPR006153| OP:NHOMO 153 OP:NHOMOORG 117 OP:PATTERN -------------------------------------------------------------------- ----2--------------------1----------1---------------------------1----1------------------111--1-------11--111------------------------------------------11---11-------1-11-2-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1--1111-----------------------------------1---1-------------------------------------------------------------------------------------1-----1--------1111-1--------------------11---------------------------------------------------11-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1-------------------------------------------21111111--------11--11------------------------------------------------- ----11------1111111-------11111111111111111---------1-112-------1-11--1111-11--1-------1-2321412211-1-2211-1-----------------------------------------------------------------------------2636163------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- DISOP:02AL 1-2, 432-454| PSIPRED ccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccccHHHHHHHccHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHccccccccccccccccccccccccc //