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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD56981.1
DDBJ      :             putative transporter substrate-binding protein
Swiss-Prot:             

Homologs  Archaea  31/68 : Bacteria  596/915 : Eukaryota  3/199 : Viruses  0/175   --->[See Alignment]
c.94.1
:512 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   44->510 1dppA PDBj 2e-24 25.0 %
:RPS:PDB   54->509 1dppA PDBj 8e-70 22.3 %
:RPS:SCOP  54->509 1uqwA  c.94.1.1 * 4e-71 22.0 %
:HMM:SCOP  36->511 1xocA1 c.94.1.1 * 8.5e-100 30.3 %
:RPS:PFM   87->354 PF00496 * SBP_bac_5 7e-38 37.7 %
:HMM:PFM   86->428 PF00496 * SBP_bac_5 1e-73 29.7 340/372  
:BLT:SWISS 68->475 HBPA_HAEIN 4e-29 29.8 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD56981.1 GT:GENE BAD56981.1 GT:PRODUCT putative transporter substrate-binding protein GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 2305979..2307517 GB:FROM 2305979 GB:TO 2307517 GB:DIRECTION + GB:PRODUCT putative transporter substrate-binding protein GB:PROTEIN_ID BAD56981.1 LENGTH 512 SQ:AASEQ MEHEPPRGRLGRRAFLVGSALGAGALVAGCGGRSTAGVDTDVFTAAFQGSGAGEGIDPGVNTLFIDEARMKSVYDGLFEVDETMTPIPRLAAGAEPNADGTRWRITLREARWHDGRAFVADDVLSTLARVLGPPQRRPFVAASSLTEVDLPACRAVDDRTVEIALRRPAFDFLIALSAYGTKIVPAGAQDFDRPVGTGPFVFRSFEPGRQFIATRNEHYWDGAPVIGELRIVSAEADARLNALRSGQVDFADNLGPAASRVLSGDRGVELTSTPGSGIYFFAMKTDRPPFDNPDVRRALMRMVDREEMVKVALEGQGEVAGDVFGRGYQYYAELEPHRYDPDEARRLLDRAGVRDLRFDLFTAPVAHGFVEAARLFAEQAAACGVHVDVVIGSKDTYYTDSMQTGALTMGQSGPLPIPNHFASRLLTDAPQNRTRFADPEFDALYVRAQATAATEGRAAIYRTMHEIVHDRGGFVFFASTLWHSAARSGFRDVPAAVPNSHGWARFDGVTAR GT:EXON 1|1-512:0| BL:SWS:NREP 1 BL:SWS:REP 68->475|HBPA_HAEIN|4e-29|29.8|406/547| SEG 14->32|aflvgsalgagalvagcgg| SEG 372->382|aarlfaeqaaa| SEG 447->459|raqataategraa| BL:PDB:NREP 1 BL:PDB:REP 44->510|1dppA|2e-24|25.0|464/507| RP:PDB:NREP 1 RP:PDB:REP 54->509|1dppA|8e-70|22.3|453/507| RP:PFM:NREP 1 RP:PFM:REP 87->354|PF00496|7e-38|37.7|265/366|SBP_bac_5| HM:PFM:NREP 1 HM:PFM:REP 86->428|PF00496|1e-73|29.7|340/372|SBP_bac_5| GO:PFM:NREP 2 GO:PFM GO:0005215|"GO:transporter activity"|PF00496|IPR000914| GO:PFM GO:0006810|"GO:transport"|PF00496|IPR000914| RP:SCP:NREP 1 RP:SCP:REP 54->509|1uqwA|4e-71|22.0|449/487|c.94.1.1| HM:SCP:REP 36->511|1xocA1|8.5e-100|30.3|465/0|c.94.1.1|1/1|Periplasmic binding protein-like II| OP:NHOMO 2877 OP:NHOMOORG 630 OP:PATTERN 11111-----------1-1111---1122-32-2---------112-43-HA6-1122--1---2--- 11--2342333-11-1111-12---611111-2111295A-62F6752231-553212--4411A48247123333--213-3--111-----------------1---1----------1111------1---1-444633326A-1-11112211---1-1-1-221221---------1-8241122-12389A9B9BB7AACA8ACA6652B9A3147854222222U71222122122222223---18--------1-------1--------111-111---------------------------2---------1B242333334323322111111232429--129A7421-71-226115621-----12--121JGW--474-6-7779789688J-34D32A4GLP--eLLNABAHFGJNJ3-1169B869A7AA1111111113321-66-------------------------------2---CC89A68888655555669955552565E6385--445-151221C4DL13--3-241----------11--25-31262131131111111211----24111111-1111111-111111111-11--562112111131111111211111121121--111--------89JE6BA8888887868-8887888787888788886CDCEB7776656666666666667C66766675-755566656666---1-----------527666--12111-6122------2-14425555484946655-889---------134355555546655--1--------------A------311222122---------------------------111--38221241 --------------------------------------------------------------------------------------------------------------------------------------------------------------1----2---------------------1------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 477 STR:RPRED 93.2 SQ:SECSTR #################################TcccccccEEEEEEccccccccccGGGcccHHHHHTHHHHccccEEEcTcccEEEccEEEEEEcTTccEEEEEEccccccccTTccccccccHHHHHHHHHHHHcTTcGGGGGGGHEEEEEEEETTEEEEEEccccTTHHHHHTcGGGccccHHHHHHHcccccccEEEEEEETTTEEEEEEcTTcccccccccEEEEEcccHHHHHHHHHTTcccccccccHHHHHHHHHcccEEEEEEcccEEEEEEEcTTcTTTTcHHHHHHHHHTccHHHHHHHTTTTcEEEccccccTTcTTcTTcccccccHHHHHHHHHHTTcTTEEccccccTTcTTHHHHHHHHHHHHHTTTEEEEEEcccHHHHHHHHHcccEEEEEEEcccccTHHHHHHHHcHHcccTTccccHHHHHHHTHHHHcccHHHHHHHHHHHHHHHHHHccEEEEEEEcEEEEEETTEEccccccccTTccccccccE## DISOP:02AL 1-11, 30-44| PSIPRED cccccccccccHHHHHHHHHHHHHHHHHccccccccccccccEEEEEEEccccccccccccccccHHHHHHHHHHHHEEEccccccccccccEEEEccccEEEEEEEccEEEcccccccHHHHHHHHHHHHcccccccHHHHHccccccccEEEEEccEEEEEEEccccHHHHHHHccccccccccccccccccEEcccEEEEEEEcccEEEEEEccccccccccccEEEEEEccHHHHHHHHHcccEEEEEcccHHHHHHHHccccEEEEEEcccEEEEEEEEccccccccHHHHHHHHHHccHHHHHHHHHHcccEEEccccccccccccccccccccHHHHHHHHHHccccccEEEEEEccccHHHHHHHHHHHHHHHHcccEEEEEEccHHHHHHHHHccccEEEEEccccccHHHHHHHHHccccccccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccEEEEEEEEEEEEEEccccccccccccccccccccccEEc //