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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD56985.1
DDBJ      :             putative ABC transporter ATP-binding protein
Swiss-Prot:             

Homologs  Archaea  43/68 : Bacteria  633/915 : Eukaryota  4/199 : Viruses  0/175   --->[See Alignment]
c.37.1
:494 amino acids
:PSIPRED
:DISOPRED
:BLT:PDB   9->229 1v43A PDBj 7e-10 29.1 %
:BLT:PDB   245->479 3dhwC PDBj 1e-17 28.9 %
:RPS:PDB   6->220 2dwoA PDBj 6e-17 6.3 %
:RPS:PDB   219->486 3dmdC PDBj 3e-27 8.6 %
:RPS:SCOP  4->227 1ji0A  c.37.1.12 * 3e-23 25.7 %
:RPS:SCOP  246->487 1b0uA  c.37.1.12 * 7e-27 20.7 %
:HMM:SCOP  6->228 1pf4A1 c.37.1.12 * 9.2e-47 39.3 %
:HMM:SCOP  248->470 1ii8.1 c.37.1.12 * 2.4e-55 32.6 %
:RPS:PFM   16->99 PF06068 * TIP49 1e-04 35.4 %
:HMM:PFM   48->171 PF00005 * ABC_tran 5.5e-14 30.4 102/118  
:HMM:PFM   285->412 PF00005 * ABC_tran 1.2e-19 30.8 117/118  
:HMM:PFM   265->303 PF01078 * Mg_chelatase 0.00071 25.6 39/207  
:HMM:PFM   30->58 PF00154 * RecA 2.1e-05 44.8 29/323  
:BLT:SWISS 3->49 SSUB1_PARDP 2e-05 42.6 %
:BLT:SWISS 22->485 YEJF_ECOLI 4e-23 25.1 %
:PROS 144->158|PS00211|ABC_TRANSPORTER_1
:PROS 384->398|PS00211|ABC_TRANSPORTER_1
:REPEAT 2|8->226|245->468
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD56985.1 GT:GENE BAD56985.1 GT:PRODUCT putative ABC transporter ATP-binding protein GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 2310065..2311549 GB:FROM 2310065 GB:TO 2311549 GB:DIRECTION + GB:PRODUCT putative ABC transporter ATP-binding protein GB:PROTEIN_ID BAD56985.1 LENGTH 494 SQ:AASEQ MTRVAEPLIEVRGLGARAGAATILDDIGFALPAGRIVTLFGPSGAGKTTIAAAVAGVRQPGVQLTGDIRHHGEIRVGYLPQNAAATLNPARRVGAALHELVGLERPRLPRAQRRARVAQILATAAFDVADADRDAVLRRYPFEFSGGERARLALAQVLAVRPDVLVIDEPTVGLDPIARAALLRSLATLRAQGAAILLVTHDPVAERAGDRTLYVHGGRIVEELPPEPVASEPGGKPAAAPSAPVLRLRGVTVTLHRRRILHEIDLAVRAGELLAILGVSGAGKSTIARCMAGLVAPRHGAVLLDDQPLPVLRRRSRAQIAQVQYVWQESASSFDPRRPVLDQVAATAVRLRGLARDAARAEAADTLADLGLAAEQLLRRPAGLSGGQLQRAALARALLARPRVLLCDEITTALDEPTAARIHRHLDAYRRHTGAAIVAIGHDLPGQLDRADRVALVDAGRLVDLGPPARLLAQPRTPLLADLLAAESPPGQGT GT:EXON 1|1-494:0| BL:SWS:NREP 2 BL:SWS:REP 3->49|SSUB1_PARDP|2e-05|42.6|47/242| BL:SWS:REP 22->485|YEJF_ECOLI|4e-23|25.1|458/529| PROS 144->158|PS00211|ABC_TRANSPORTER_1|PDOC00185| PROS 384->398|PS00211|ABC_TRANSPORTER_1|PDOC00185| NREPEAT 1 REPEAT 2|8->226|245->468| SEG 105->135|rprlpraqrrarvaqilataafdvadadrda| SEG 149->161|rarlalaqvlavr| SEG 178->191|araallrslatlra| SEG 230->244|asepggkpaaapsap| SEG 348->375|avrlrglardaaraeaadtladlglaae| SEG 391->406|raalarallarprvll| BL:PDB:NREP 2 BL:PDB:REP 9->229|1v43A|7e-10|29.1|208/353| BL:PDB:REP 245->479|3dhwC|1e-17|28.9|228/343| RP:PDB:NREP 2 RP:PDB:REP 6->220|2dwoA|6e-17|6.3|187/449| RP:PDB:REP 219->486|3dmdC|3e-27|8.6|245/318| RP:PFM:NREP 1 RP:PFM:REP 16->99|PF06068|1e-04|35.4|79/394|TIP49| HM:PFM:NREP 4 HM:PFM:REP 48->171|PF00005|5.5e-14|30.4|102/118|ABC_tran| HM:PFM:REP 285->412|PF00005|1.2e-19|30.8|117/118|ABC_tran| HM:PFM:REP 265->303|PF01078|0.00071|25.6|39/207|Mg_chelatase| HM:PFM:REP 30->58|PF00154|2.1e-05|44.8|29/323|RecA| GO:PFM:NREP 2 GO:PFM GO:0003678|"GO:DNA helicase activity"|PF06068|IPR010339| GO:PFM GO:0005524|"GO:ATP binding"|PF06068|IPR010339| RP:SCP:NREP 2 RP:SCP:REP 4->227|1ji0A|3e-23|25.7|222/240|c.37.1.12| RP:SCP:REP 246->487|1b0uA|7e-27|20.7|241/258|c.37.1.12| HM:SCP:REP 6->228|1pf4A1|9.2e-47|39.3|211/244|c.37.1.12|1/2|P-loop containing nucleoside triphosphate hydrolases| HM:SCP:REP 248->470|1ii8.1|2.4e-55|32.6|218/370|c.37.1.12|2/2|P-loop containing nucleoside triphosphate hydrolases| OP:NHOMO 2206 OP:NHOMOORG 680 OP:PATTERN 331-11----------4211211222212141--111-----113313--943-323311212-3--- 11-2B241333-3123311-13--261111111111646828287E34133-9A5412115441857889343334221-4-1----------------------1--1--22222222-11112--111--1-1144443---63---1---23--111-112113-----1-1---1-11---21232-3--34334345343533497444-5441145421-11111D6-222222-2222222111-11-21441---111--34------2331212212122-----1--1--1111111111111211111111115142222222212211--21112---33--1264321-4521-121142111---2-----32DAF2152114-5545556445D-23B23919DM11WFFL9AALGBJIE3-1337C8898387111111112444-147----------------------11------212-18B83746666564444337744443545D4474113351142231C37Q23--22222----------21-12312-22242112-111311211----1213-----------112222222-1---11122------13-1111------1--1-1----1123-------64E82455564544455-5555544555545555552787981123445554555544455755454542-111111111111---1----------1555111-21122222111111-1---12222212356734434-67A----------133611111221331111111111-1-1---1111111--------2-----------------------------1--25212--1 --------------------------------------------------------------------------------------------------------------------------------------------------------------1------1-------1--------------------1---- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- DISOP:02AL 1-4, 491-494| PSIPRED cccccccEEEEEccEEEcccEEEEccccEEEcccEEEEEEccccccHHHHHHHHHHHcccccccccEEEEEcccEEEEEEccHHHHccccccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHccccccccHHHHHHcccccccHHHHHHHHHHHHHHccccEEEEccccccccHHHHHHHHHHHHHHHHcccEEEEEEcHHHHHHHccEEEEEEccEEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEcccccEEEccEEEEEEEcccccHHHHHHHHHccccccccEEEEEcEEcccccHHHHHHHcccccccccccccccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccccHHHccHHHcccHHHHHHHHHHHHHccccEEEEEcccccccHHHHHHHHHHHHHHHHHcccEEEEEEccHHHHHHHHcHHHHHcccEEEEEEcHHHHHHccHHHHHHHHHHHcccccccc //