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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD56987.1
DDBJ      :             putative transporter
Swiss-Prot:             

Homologs  Archaea  24/68 : Bacteria  609/915 : Eukaryota  79/199 : Viruses  0/175   --->[See Alignment]
f.38.1
:487 amino acids
:PSIPRED
:DISOPRED
:RPS:SCOP  1->189 1pw4A  f.38.1.1 * 4e-11 11.2 %
:HMM:SCOP  1->479 1pw4A_ f.38.1.1 * 2.9e-69 31.1 %
:RPS:PFM   20->186 PF07690 * MFS_1 2e-11 28.3 %
:HMM:PFM   21->413 PF07690 * MFS_1 2.2e-47 25.0 344/353  
:HMM:PFM   440->479 PF07690 * MFS_1 0.00029 32.5 40/353  
:BLT:SWISS 17->422 YCNB_BACSU 5e-51 33.8 %
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD56987.1 GT:GENE BAD56987.1 GT:PRODUCT putative transporter GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 2312275..2313738 GB:FROM 2312275 GB:TO 2313738 GB:DIRECTION + GB:PRODUCT putative transporter GB:PROTEIN_ID BAD56987.1 LENGTH 487 SQ:AASEQ MSAHPSAPVTGGRTPTVIRVLVLATFVVILNETIMINAIPRLMADLGVTERAAQWVSTAFMLTMAAVIPTTGWFLQRVPTRVAYTTAMGVFLFGTALSAVAPTFAVLLLGRIIQAVGTAVMMPLLMTTLMTVVPEHDRGRVMGNVTLAISVAPAMGPVISGLVLQIASWRWLFVLVLPIAGIITWLGLRRLENVGEPEAGSIDVVSVVLAALGFGGLVFGLSRFEAGSLATPALIVAVGSALIAAFVLRQLRLQRRGGPLLDLRVLRSGTYTKSLVLMSIAFMAMLGSMMLLPLYLQNLRGLSPLATGLLVMPGGLAMGLLGPTIGRLYDRFGGRPLVIPGALGIAASLAGFTQISMTMPYWQLLALHILLMVALAATFTPVFTLGLGSLTQHLYSHGSSMLGTLQQVAAAFGTALVVTVMSARSTTLIENGTEETLAHLDGMRLAFLVSAVLALIVVVMAVLLPNRAEAPDEPEEIEEPAVELVKG GT:EXON 1|1-487:0| BL:SWS:NREP 1 BL:SWS:REP 17->422|YCNB_BACSU|5e-51|33.8|405/472| TM:NTM 14 TM:REGION 17->39| TM:REGION 53->75| TM:REGION 86->108| TM:REGION 114->135| TM:REGION 142->164| TM:REGION 167->188| TM:REGION 199->221| TM:REGION 229->251| TM:REGION 273->295| TM:REGION 304->326| TM:REGION 333->355| TM:REGION 369->391| TM:REGION 406->428| TM:REGION 444->466| SEG 120->134|vmmpllmttlmtvvp| SEG 204->222|vvsvvlaalgfgglvfgls| SEG 248->264|lrqlrlqrrggplldlr| SEG 308->323|gllvmpgglamgllgp| SEG 364->377|llalhillmvalaa| SEG 445->464|laflvsavlalivvvmavll| SEG 468->483|aeapdepeeieepave| RP:PFM:NREP 1 RP:PFM:REP 20->186|PF07690|2e-11|28.3|166/347|MFS_1| HM:PFM:NREP 2 HM:PFM:REP 21->413|PF07690|2.2e-47|25.0|344/353|MFS_1| HM:PFM:REP 440->479|PF07690|0.00029|32.5|40/353|MFS_1| GO:PFM:NREP 1 GO:PFM GO:0055085|"GO:transmembrane transport"|PF07690|IPR011701| RP:SCP:NREP 1 RP:SCP:REP 1->189|1pw4A|4e-11|11.2|188/434|f.38.1.1| HM:SCP:REP 1->479|1pw4A_|2.9e-69|31.1|408/447|f.38.1.1|1/1|MFS general substrate transporter| OP:NHOMO 2799 OP:NHOMOORG 712 OP:PATTERN ------311121111--------1--------212--------36313--121--------111---- 3252I1245554-233444-46--8344444375567CA82948658323314554-3--6362446AF723222554-262113111221--2-----1-1---3-1-1--------------1111---111--3442411152--------------------1--1--------------2-1---2418AABABAAC3CBBAA9626657AB922335523233438F3444444434444445445437739A35313CB77BA53695764422211-1122-----------11111111111111-----1--1---8A11121111112477-332-----2--2-453231--3321-----11-711311112246662224422211321233333-3232264625--B334783B982352-1-1--1112---2222222241123-13------------11--1----1--1------232324323FGGEGHA9898DDGFAA9A5BKCG898B--548-132241425124-----431222222---112-1411-1---111--1-11214-1221221-2------------1---------11-44133121--111-2222--1333-1111-1-1-1----------27553735555566655-5555556555565555553797543433213223222223232755365541-433333333333----55332----1-423----21-22-1----12222-11121144545666244541676111111111-1--4444441----23323222221-----------------------------------------------------------121 ----11-------1236845799BEG87546567772434244321A77C6AGB5789E5771---2-1-----2-2--1-111--43-6516-3121-45-2234--1-------------------------------------------------1------------------------------5--------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- DISOP:02AL 1-11, 465-487| PSIPRED ccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHcc //