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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD56988.1
DDBJ      :             putative transcriptional regulator
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  49/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
a.121.1a.4.1
:258 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   32->157 2optB PDBj 1e-10 30.9 %
:RPS:PDB   33->247 3b6aA PDBj 2e-12 25.4 %
:RPS:SCOP  25->102 2oi8A1  a.4.1.9 * 1e-10 19.2 %
:RPS:SCOP  103->253 2g7lA2  a.121.1.1 * 3e-14 17.1 %
:HMM:SCOP  30->101 1zk8A1 a.4.1.9 * 6e-11 30.6 %
:HMM:SCOP  102->255 2g7gA2 a.121.1.1 * 8.8e-29 36.4 %
:RPS:PFM   98->247 PF02909 * TetR_C 2e-07 33.3 %
:HMM:PFM   98->250 PF02909 * TetR_C 3.5e-18 27.7 137/139  
:HMM:PFM   37->81 PF00440 * TetR_N 5.3e-13 33.3 45/47  
:BLT:SWISS 22->253 Y1388_MYCBO 3e-10 28.1 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD56988.1 GT:GENE BAD56988.1 GT:PRODUCT putative transcriptional regulator GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(2313811..2314587) GB:FROM 2313811 GB:TO 2314587 GB:DIRECTION - GB:PRODUCT putative transcriptional regulator GB:PROTEIN_ID BAD56988.1 LENGTH 258 SQ:AASEQ MCSVAAPKNSSDPARTLTLLWGLHPKPGRKGLTVATIVAAGIEVADAEGLDAVTMRRVSERLGVGAMSLYTHVPGKTDLVELMHDAVLADLYRDPGEPAAAGDWRAGLTLVAQRNWQLYQRHPWLLGLIGTRPVPGPHSIAKYEAELRPLDGLGLGDVEMDAVLTLVLTHVQGTARLAATSAATAADSQLTDPQWWDITGPILDRLFDPAKFPVAARVGAAAGSEHNAAVDPDHALGFGLERILDGIAELIERRREQP GT:EXON 1|1-258:0| BL:SWS:NREP 1 BL:SWS:REP 22->253|Y1388_MYCBO|3e-10|28.1|221/261| SEG 174->186|tarlaatsaataa| BL:PDB:NREP 1 BL:PDB:REP 32->157|2optB|1e-10|30.9|123/205| RP:PDB:NREP 1 RP:PDB:REP 33->247|3b6aA|2e-12|25.4|201/213| RP:PFM:NREP 1 RP:PFM:REP 98->247|PF02909|2e-07|33.3|135/140|TetR_C| HM:PFM:NREP 2 HM:PFM:REP 98->250|PF02909|3.5e-18|27.7|137/139|TetR_C| HM:PFM:REP 37->81|PF00440|5.3e-13|33.3|45/47|TetR_N| GO:PFM:NREP 2 GO:PFM GO:0016481|"GO:negative regulation of transcription"|PF02909|IPR004111| GO:PFM GO:0016566|"GO:specific transcriptional repressor activity"|PF02909|IPR004111| RP:SCP:NREP 2 RP:SCP:REP 25->102|2oi8A1|1e-10|19.2|78/79|a.4.1.9| RP:SCP:REP 103->253|2g7lA2|3e-14|17.1|129/133|a.121.1.1| HM:SCP:REP 30->101|1zk8A1|6e-11|30.6|72/0|a.4.1.9|1/1|Homeodomain-like| HM:SCP:REP 102->255|2g7gA2|8.8e-29|36.4|132/0|a.121.1.1|1/1|Tetracyclin repressor-like, C-terminal domain| OP:NHOMO 120 OP:NHOMOORG 49 OP:PATTERN -------------------------------------------------------------------- ----7---------211----1--11-----131218553-535471--1-------2--23-14-8354------------------------------------------------------------------------------------------------------------------------------------------------------------------1--------------------------------------------------------------------------------------------------------------------------------------------------1---------------------------------------------111111111---------------------------------------------------------------------------------------------------------------------------------------------------------------------13----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1-1------------------------------------------11----------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 224 STR:RPRED 86.8 SQ:SECSTR #######################cHHTccHHHcTTHHHHHHHHHHHHHcGGGccHHHHHHHTTccHHHHHHHHccHHHHHHHHHHHHGGGcccccccTTccTcHHHHHHHHHHHHHHHHHHcTTHHHHHHTcccccHHHHHHHHHHHHHHHTTTccHHHHHHHHHHHHHHHHHHHHHHHTcccTTHHHHHHHHHHHHHHHTccTTTcHHHHHTHHHHHcccHTHHHHHcccHHHHHHHHHHHHHHHH########### DISOP:02AL 1-35, 253-258| PSIPRED cccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHcccccccHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHccccHHHHHHHHHHHHHHHccccccHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHccc //