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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD56993.1
DDBJ      :             putative ABC transporter
Swiss-Prot:             

Homologs  Archaea  33/68 : Bacteria  891/915 : Eukaryota  197/199 : Viruses  1/175   --->[See Alignment]
c.37.1f.37.1
:605 amino acids
:PSIPRED
:DISOPRED
:BLT:PDB   46->600 2hydA PDBj 1e-46 24.8 %
:RPS:PDB   67->604 3b60A PDBj 1e-45 25.7 %
:RPS:SCOP  46->337 2hydA2  f.37.1.1 * 1e-36 17.5 %
:RPS:SCOP  362->605 1q3hA  c.37.1.12 * 3e-28 20.3 %
:HMM:SCOP  15->342 1pf4A2 f.37.1.1 * 1.1e-64 28.6 %
:HMM:SCOP  341->589 1pf4A1 c.37.1.12 * 1.2e-64 41.6 %
:RPS:PFM   50->306 PF00664 * ABC_membrane 3e-16 25.4 %
:HMM:PFM   46->314 PF00664 * ABC_membrane 2e-36 23.8 269/275  
:HMM:PFM   404->533 PF00005 * ABC_tran 8.8e-16 33.9 112/118  
:HMM:PFM   499->574 PF02463 * SMC_N 2.2e-06 28.4 74/220  
:BLT:SWISS 62->600 YWJA_BACSU 4e-49 27.0 %
:PROS 500->514|PS00211|ABC_TRANSPORTER_1
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD56993.1 GT:GENE BAD56993.1 GT:PRODUCT putative ABC transporter GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 2317997..2319814 GB:FROM 2317997 GB:TO 2319814 GB:DIRECTION + GB:PRODUCT putative ABC transporter GB:PROTEIN_ID BAD56993.1 LENGTH 605 SQ:AASEQ MSITVEENAEAAEVDRPGPRERSRGALTSLLRFRPYLRPYRVPFVAATAMSVLAMLTAVVTPLVVARIVDGPIAAGDLGGVLVPVSAVLVLGVIEAVGIWGRRWLLAEPATRFETTMRAEIFAALQARSIGRHDAWEAGQLLSRAVDDLARLRRFIGFAGPVLVIHAVVIPVGLVVLAVMSWQIGLVYAVAAVPIAAVCARFERRYSVASRRSQDQAGDLSTTAQEAAQGIRVLKAFGRGPFFGAKFAAQARALRETELAKVRLDATLWSAMVSLSELILVFALGFGAYSVVSGTMSLGAVVGTVTLATFLQWPIIWTGFLLAELNDAGTAADRFWEIIDTPVDITDPVDPVPLPERVTGELRLENVRFAFPDAPEPVLRDISLVVRPGETVALVGATGSGKTALLGLIPRLHDVTGGAVRIDGIDIRQLRLADLRSLVTVAFEEPVLFSASVRENVALGDPAASDAEVRAALEVAQATEFVDALPWGLDTRIGEQGLSLSGGQRQRLALARAVLARAGQQRRARVVVLDDPLSALDVQTEERVQQRLRGALAGATTLLVAHRPSTAALADRVVLLDDGRVRAEGAHDQLLRTSSRYRELMGGEP GT:EXON 1|1-605:0| BL:SWS:NREP 1 BL:SWS:REP 62->600|YWJA_BACSU|4e-49|27.0|526/575| PROS 500->514|PS00211|ABC_TRANSPORTER_1|PDOC00185| TM:NTM 6 TM:REGION 42->64| TM:REGION 75->97| TM:REGION 156->178| TM:REGION 181->202| TM:REGION 270->292| TM:REGION 300->322| SEG 30->45|llrfrpylrpyrvpfv| SEG 164->179|vihavvipvglvvlav| SEG 187->200|vyavaavpiaavca| SEG 338->353|iidtpvditdpvdpvp| SEG 502->529|ggqrqrlalaravlaragqqrrarvvvl| SEG 547->561|rlrgalagattllva| BL:PDB:NREP 1 BL:PDB:REP 46->600|2hydA|1e-46|24.8|548/578| RP:PDB:NREP 1 RP:PDB:REP 67->604|3b60A|1e-45|25.7|529/572| RP:PFM:NREP 1 RP:PFM:REP 50->306|PF00664|3e-16|25.4|256/274|ABC_membrane| HM:PFM:NREP 3 HM:PFM:REP 46->314|PF00664|2e-36|23.8|269/275|ABC_membrane| HM:PFM:REP 404->533|PF00005|8.8e-16|33.9|112/118|ABC_tran| HM:PFM:REP 499->574|PF02463|2.2e-06|28.4|74/220|SMC_N| GO:PFM:NREP 5 GO:PFM GO:0005524|"GO:ATP binding"|PF00664|IPR001140| GO:PFM GO:0006810|"GO:transport"|PF00664|IPR001140| GO:PFM GO:0016021|"GO:integral to membrane"|PF00664|IPR001140| GO:PFM GO:0042626|"GO:ATPase activity, coupled to transmembrane movement of substances"|PF00664|IPR001140| GO:PFM GO:0055085|"GO:transmembrane transport"|PF00664|IPR001140| RP:SCP:NREP 2 RP:SCP:REP 46->337|2hydA2|1e-36|17.5|292/323|f.37.1.1| RP:SCP:REP 362->605|1q3hA|3e-28|20.3|222/265|c.37.1.12| HM:SCP:REP 15->342|1pf4A2|1.1e-64|28.6|311/311|f.37.1.1|1/1|ABC transporter transmembrane region| HM:SCP:REP 341->589|1pf4A1|1.2e-64|41.6|243/244|c.37.1.12|1/1|P-loop containing nucleoside triphosphate hydrolases| OP:NHOMO 11289 OP:NHOMOORG 1122 OP:PATTERN -------1111-111131------511343213-1--------32345--451-322---22------ 75D3I67899964356855-5822895555565777FI9A4E7MEFD997569BD38B12BIB7L4CMNU67888A98C4SF4212-17753-435A--53975495A6A1111111111111128569B97A778799BE322I1GBDHAA74477A787A6887EMRUC4B665658565443722D83B3899B9BBDD8BCCBBDCEDD8BCDF4689DBADEDCDEGO75555554555555575445K959FG94C4ECC66HF963779B8A79BH989DCCBECB99CEACB5654555575555DDDAA9DCD9FADCEEEEEGEC5F9GCHH5BBCQ89GKBDB31UUE2225412889D65691267754545552EGB9896D9B87788789969D-CDHCDCEFCJ73KHHDHKDIJIDGBA66687IAAAAB96AAAAAAAA7795AB9D221122222245446745665555532521457235AA8BADDCEA7777699979A9857B99A68523556B85859586A779B4A4796233353376788555636366476323157557583933539B295222322222221211111145234779855438376A688878777776898C778--55983221111D677699688C6AC966-86666686888A955655889BADBFA8A687888888888887658566643CCEDEECBCCEC113235433688641A5865546435455344534454453359B9BC9GF959DCAB5ABA4444444343677C99998CABEF67A788788844442292663344--------h-D22124-432-331---3261-411264A5579787263 2255MJF-OC52LNLCGKIHKNLWPXKEECECENMJ9IFGHFFCCBKGKSRNZSFFOHFEDEFBA6692B858AD7825866668958-PWBGNKKEBEFBAFNKE2EiW*PYQfWeIEEEHMGYYBjB**a1fPlEFIFUHKpQ8GFG8RCA*HOHMSHb*IgLGEgIO*mehU8EB9*587GDZZa*EhiDGeXbcM ------------------------------------------------------------------------------------------------------------------------------1------------------------------------------------ DISOP:02AL 1-29, 343-355| PSIPRED ccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccEEEEEEEEEEEccccccHHHccccEEEccccEEEEEccccccHHHHHHHHHHcccccccEEEEccEEcccccHHHHHHHccccccccEEEcccHHHHHHHccccccHHHHHHHHHHHHHHHHHHHcHHHccccccccccccccHHHHHHHHHHHHHHHHcccccccEEEEcHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEcHHHHHHHccEEEEEEccEEEEEccHHHHHHcccHHHHHHHccc //