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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD56994.1
DDBJ      :             putative ABC transporter
Swiss-Prot:             

Homologs  Archaea  68/68 : Bacteria  908/915 : Eukaryota  197/199 : Viruses  1/175   --->[See Alignment]
c.37.1f.37.1
:629 amino acids
:PSIPRED
:DISOPRED
:BLT:PDB   122->622 2hydA PDBj 1e-69 30.4 %
:RPS:PDB   122->623 3b60A PDBj 4e-66 32.5 %
:RPS:SCOP  56->363 2hydA2  f.37.1.1 * 3e-43 16.9 %
:RPS:SCOP  382->612 1b0uA  c.37.1.12 * 2e-41 24.7 %
:HMM:SCOP  17->363 1pf4A2 f.37.1.1 * 5.3e-71 31.5 %
:HMM:SCOP  360->609 1pf4A1 c.37.1.12 * 1.4e-64 38.7 %
:RPS:PFM   125->315 PF00664 * ABC_membrane 2e-16 27.7 %
:RPS:PFM   374->435 PF05272 * VirE 2e-04 38.7 %
:RPS:PFM   429->554 PF00005 * ABC_tran 6e-11 36.4 %
:RPS:PFM   526->593 PF02463 * SMC_N 5e-05 35.3 %
:HMM:PFM   63->331 PF00664 * ABC_membrane 4.8e-32 21.3 268/275  
:HMM:PFM   429->554 PF00005 * ABC_tran 3.9e-23 38.9 113/118  
:HMM:PFM   415->439 PF03193 * DUF258 0.00014 36.0 25/161  
:BLT:SWISS 56->620 YKNV_BACSU 4e-83 32.9 %
:PROS 526->540|PS00211|ABC_TRANSPORTER_1
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD56994.1 GT:GENE BAD56994.1 GT:PRODUCT putative ABC transporter GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 2319811..2321700 GB:FROM 2319811 GB:TO 2321700 GB:DIRECTION + GB:PRODUCT putative ABC transporter GB:PROTEIN_ID BAD56994.1 LENGTH 629 SQ:AASEQ MSTDSAVTERATGPNTEPDEAADWRGIANEDTEVTETGNLVLARRSRRLLADLVRPYRGTLALVLAIIVVDNAVTVAGPLFVAYALDRGIGAGRAGDWGPLSLAVGGYAGAALLGGVTTFCFVRLAGRLSQNVLYDLRVRAFAHTQRLDVGFHEKYTSGKVVTRLTGDIETLQELLEGALNEALGAILSVVTIAVLLVYLDRPLAAVVFAGFVPLFLVTRWAQRRQRAGYRRTRGAIARVVVHFVEAMGGMRAVQAFRREQRNASVLAAEDDAYRTANVAASRGMGDYAGLTRLLGNLTTVVVLMVGAWRVVHGDLAVGVLAAYLLYLKNFYGPLDELAQVFNSYQSAAAALEKISGVLEERPAVPEPADPVRLEKVSGAMRLENVWFDYAGAEEAPARRTGPVLPEFTLDIPAGQVVALVGPTGAGKSTLAKLLTRFYDPTGGRVTLDGVDLRRLTDADLRRHVVMVTQESYLFSGSVADNIRLGRPEATDAEVYEAARAVGLSEVVAALPEGFDTDVRRRGGRLSAGQRQLVAFARVFLADPAVIVLDEATSSLDIPGERLVQRALETVLRERTAVIIAHRLSTVAIADRVLVLENGRVVEDGTPAELIAGDGRFAGLHAAWRESLV GT:EXON 1|1-629:0| BL:SWS:NREP 1 BL:SWS:REP 56->620|YKNV_BACSU|4e-83|32.9|554/604| PROS 526->540|PS00211|ABC_TRANSPORTER_1|PDOC00185| TM:NTM 2 TM:REGION 190->212| TM:REGION 301->323| SEG 40->55|lvlarrsrrlladlvr| SEG 101->116|lslavggyagaallgg| SEG 172->188|lqellegalnealgail| SEG 220->236|rwaqrrqragyrrtrga| SEG 316->328|lavgvlaayllyl| SEG 452->463|dlrrltdadlrr| BL:PDB:NREP 1 BL:PDB:REP 122->622|2hydA|1e-69|30.4|494/578| RP:PDB:NREP 1 RP:PDB:REP 122->623|3b60A|4e-66|32.5|493/572| RP:PFM:NREP 4 RP:PFM:REP 125->315|PF00664|2e-16|27.7|191/274|ABC_membrane| RP:PFM:REP 374->435|PF05272|2e-04|38.7|62/199|VirE| RP:PFM:REP 429->554|PF00005|6e-11|36.4|121/123|ABC_tran| RP:PFM:REP 526->593|PF02463|5e-05|35.3|68/536|SMC_N| HM:PFM:NREP 3 HM:PFM:REP 63->331|PF00664|4.8e-32|21.3|268/275|ABC_membrane| HM:PFM:REP 429->554|PF00005|3.9e-23|38.9|113/118|ABC_tran| HM:PFM:REP 415->439|PF03193|0.00014|36.0|25/161|DUF258| GO:PFM:NREP 9 GO:PFM GO:0005524|"GO:ATP binding"|PF00664|IPR001140| GO:PFM GO:0006810|"GO:transport"|PF00664|IPR001140| GO:PFM GO:0016021|"GO:integral to membrane"|PF00664|IPR001140| GO:PFM GO:0042626|"GO:ATPase activity, coupled to transmembrane movement of substances"|PF00664|IPR001140| GO:PFM GO:0055085|"GO:transmembrane transport"|PF00664|IPR001140| GO:PFM GO:0005524|"GO:ATP binding"|PF00005|IPR003439| GO:PFM GO:0016887|"GO:ATPase activity"|PF00005|IPR003439| GO:PFM GO:0005524|"GO:ATP binding"|PF02463|IPR003395| GO:PFM GO:0005694|"GO:chromosome"|PF02463|IPR003395| RP:SCP:NREP 2 RP:SCP:REP 56->363|2hydA2|3e-43|16.9|308/323|f.37.1.1| RP:SCP:REP 382->612|1b0uA|2e-41|24.7|219/258|c.37.1.12| HM:SCP:REP 17->363|1pf4A2|5.3e-71|31.5|311/311|f.37.1.1|1/1|ABC transporter transmembrane region| HM:SCP:REP 360->609|1pf4A1|1.4e-64|38.7|243/244|c.37.1.12|1/1|P-loop containing nucleoside triphosphate hydrolases| OP:NHOMO 35949 OP:NHOMOORG 1174 OP:PATTERN HI71A967BCBAA7B6O9CDACFJcFJQTJTIA5B677A6876JNMPUCHiXP7CHDCG9DB63G134 HLZG*QSXeecNONRMPKK-KW88R*KKKKKIcabbh***JxT*k*nYlXQGljqJQXABanpX*en***XQIGGcONZGyZR84968FFAB1B68F--77HCBAOBMEK122222223322227MJFMTEGQPPIXbbkoAAArLZSanSSXXXMOPGJFMFSVSevv*OBREFDDCOBFHDTQXABRK7SOcoosnsnuwdrvtppytijjdgwv*Pcfofabgkkjjg**QPPONOOMPPPPPOONMLIQjbQWmmVKWQejhJKsvWOJPVWTTVVXahdZeflmcgecbYdgbdbRSRQRSUTVTTQSkfgYWVgfjYagdZpfgfikicQlVbeccLTUS*NXWataULI**bQKNQIKTaTZZJNMTCNJIIHIGFCHSI***VQf**t*jvwryxpzqqt*-Ze*YV*b***I8**************CGDt**vuwv*rqMLMMMMMMoOSFMcN*765565557668677868876966875957AAE9Al**k*w*****lhgidww**tnqoVp*t*pozj8Cghdtebdb*o*s**OWXBNGKTRBDDBEDEIHGRaVOXvGTObSNbZRRZAOOLHKMQIUKNPLfmLjB9DFAA9AB99647776667EJB8BFDcbdGVAI8I9YIMPPMIOSLKKNLOOTOPM3-CCNIC222222*k**Ouekqqslrorhj-okjkpkpiolprphijhhm*****bdVeeZcceeeeecceccd*cbchhgiI3ttwvzwusuwzw22B957545EFHFJ7lZyOMMTTOCIMGHNIJRFHJHHAJBHLdScecej*p*dprgfT***889799888ATTRiWYYYWehgbdLMLFGGFFHIBBCB32JGEE878822222222*7Q87659-5552AA745475A737545GRUCBPdRTQ8QH 5655TRJ-UH87RUQIMPINSVTdWgRIIDEEESUQGNNMMKKDDDVPReXbgdNMYMNIHJICB7993E95DAEBB2AC7998FD69-TjEMOSOFGFLFBGTQI6H*e*WgVobqMJKLKWIjoK*G**f1pV*NMOMdMP*cHPMKEaIE*KULUlNf*KmPHNhST*nkzbBIGE*9A9HIpgi*ItzIJ*jqwa ------------------------------------------------------------------------------------------------------------------------------1------------------------------------------------ DISOP:02AL 1-45, 362-376| PSIPRED ccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccEEEEEEEEEEEccccccccccccHHHccccEEEcccEEEEEEccccccHHHHHHHHHHcccccccEEEEccEEcccccHHHHHHHccccccccEEEcccHHHHHHHccccccHHHHHHHHHHHHHHHHHHHccHHccccccccccccccHHHHHHHHHHHHHHcccEEEEHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEcHHHHHHHccEEEEEEccEEEEEccHHHHHHcccHHHHHHHHHHHHcc //