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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD56996.1
DDBJ      :             putative short chain dehydrogenase
Swiss-Prot:             

Homologs  Archaea  55/68 : Bacteria  828/915 : Eukaryota  176/199 : Viruses  0/175   --->[See Alignment]
c.2.1
:265 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   13->256 1nffA PDBj 6e-22 34.2 %
:RPS:PDB   16->253 1dohB PDBj 1e-31 17.8 %
:RPS:SCOP  17->253 1pwxA  c.2.1.2 * 3e-35 18.9 %
:HMM:SCOP  12->252 1zemA1 c.2.1.2 * 5.5e-72 42.5 %
:RPS:PFM   17->149 PF00106 * adh_short 3e-07 38.6 %
:HMM:PFM   17->178 PF00106 * adh_short 6.3e-29 27.4 157/167  
:HMM:PFM   135->230 PF00294 * PfkB 6.5e-05 25.6 90/300  
:BLT:SWISS 17->257 YOHF_ECOLI 2e-23 33.1 %
:PROS 148->176|PS00061|ADH_SHORT
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD56996.1 GT:GENE BAD56996.1 GT:PRODUCT putative short chain dehydrogenase GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(2322536..2323333) GB:FROM 2322536 GB:TO 2323333 GB:DIRECTION - GB:PRODUCT putative short chain dehydrogenase GB:PROTEIN_ID BAD56996.1 LENGTH 265 SQ:AASEQ MSDRKTPMLQISTPERAVVTGAASGIGLAIAEQLIAAGGRVLAFDLDGDGLAAAAEKYGRAYVPHVGSVTDTDEVRAAVGKAEAELGGIDSLFNVAGGLRPAPIVGLAEDDWDFTVDVVLRSVYLCTKYVADSMIRAGNGGSIVNIASVNAHIPLYGGSAYAAGKAGADMFAKNAALELGRHGIRVNSVLPGLVQTPMAGFILGNDQIMREFRANAVLKRPAQPAELAAPAVFLASSAAGYITGASLVVDGGYEIGSYPDLSTHL GT:EXON 1|1-265:0| BL:SWS:NREP 1 BL:SWS:REP 17->257|YOHF_ECOLI|2e-23|33.1|236/253| PROS 148->176|PS00061|ADH_SHORT|PDOC00060| SEG 42->55|lafdldgdglaaaa| SEG 156->168|yggsayaagkaga| SEG 227->239|laapavflassaa| BL:PDB:NREP 1 BL:PDB:REP 13->256|1nffA|6e-22|34.2|234/244| RP:PDB:NREP 1 RP:PDB:REP 16->253|1dohB|1e-31|17.8|236/271| RP:PFM:NREP 1 RP:PFM:REP 17->149|PF00106|3e-07|38.6|132/169|adh_short| HM:PFM:NREP 2 HM:PFM:REP 17->178|PF00106|6.3e-29|27.4|157/167|adh_short| HM:PFM:REP 135->230|PF00294|6.5e-05|25.6|90/300|PfkB| GO:PFM:NREP 2 GO:PFM GO:0008152|"GO:metabolic process"|PF00106|IPR002198| GO:PFM GO:0016491|"GO:oxidoreductase activity"|PF00106|IPR002198| RP:SCP:NREP 1 RP:SCP:REP 17->253|1pwxA|3e-35|18.9|233/252|c.2.1.2| HM:SCP:REP 12->252|1zemA1|5.5e-72|42.5|240/0|c.2.1.2|1/1|NAD(P)-binding Rossmann-fold domains| OP:NHOMO 7241 OP:NHOMOORG 1059 OP:PATTERN 1121113455555443161211115115334411---------21141--322-22111131732-21 ABH1H--3114-2-KQLAB-BO22LdA9AAAFOVVWMPgi3L5kD8922751HBA23511AAD1AAMHHD7-1111111164P11---45421211---427218M4G591111111---1111222122111222B99A722297555843311221113222416A5D2-111---1-11-E8667331B3B666669789776896F8FFCE6787EEFE965443337H3444443344444437566651615415-1-465544343354313434133322122222222222343343444334412211122244254A222222252552441353431--4611275112-24332224412526N99F11111A5YFH224DBAAAAAB998BBBBK-BDHD9JAFJXG1dOOINLRdbaVUGK8D5EAKGAGJC9A55555555BHH624741111111111--1122-11--2--1111135UR75AOKBNeVYXXaAJHIHQQbfJJJJ9GjKfGcQK35IJED6B87CAN6PL5A35323741111111223F743B2421-211222114541933533632BC33-----------1111111112-1--4467625A74C623343428631134233535--2233611-1118BA75A47888777767-8685767787868767766DED653487557767767756577G6655556114666666666661-1313121455619BED111424111111242889B827464D5CEDDADCJ9DBFCBECE2111121111233944444573788A7898744432221121554344--------1-2----------1--------------2331132352281 11--435-1-1-153FF98FCF9NCLE7845566552A6868966478HFFMPT6A845324223-2213---24-----2444-5-1-3J6F2953242224651-441hBF9A93214-24383271CO7-553213165481-421162184758EDBF4BC9665637C88332-I1-1482FEY9O32361115 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 262 STR:RPRED 98.9 SQ:SECSTR cccccccccccccGGEEEETTTTcHHHHHHHHHHHHTTcEEEEEEcccHHHHHHHHHTTccEEEEEccTTcHHHHHHHHHHHHHHHccccEEEEcccccccccGGGccHHHHHHHHHHHTHHHHHHHHHHHHHccTGGTcEEEEEccGGGTcccccccHHHHHHHHHHHHHHHHHHHHHGGGTcEEEEEEEcccccHHHHHHGGGGcHHHHHHHccTTcccccHHHHHHHHHHHHcGGGTTccccEEEEccccGGccccccG### DISOP:02AL 1-11| PSIPRED ccccccHHHHHccccEEEEEccccHHHHHHHHHHHHcccEEEEEEccHHHHHHHHHHHcccEEEEEEccccHHHHHHHHHHHHHHHccccEEEEcccccccccHHHccHHHHHHHHHHccHHHHHHHHHHHHHHHHHcccccEEEccHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHccccEEEEEcccccccHHHHHHcccHHHHHHHHHcccccccccHHHHHHHHHHHccccccccccEEEEEEccccccccccccccc //