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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD56998.1
DDBJ      :             putative transcriptional regulator
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  312/915 : Eukaryota  2/199 : Viruses  0/175   --->[See Alignment]
a.4.5c.94.1
:305 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   5->64 3hhgG PDBj 1e-07 36.7 %
:BLT:PDB   90->294 2h9bA PDBj 3e-08 27.3 %
:RPS:PDB   3->206 1bi3A PDBj 8e-16 12.6 %
:RPS:SCOP  1->64 1b9mA1  a.4.5.8 * 1e-12 20.3 %
:RPS:SCOP  91->288 1i69A  c.94.1.1 * 2e-15 20.0 %
:HMM:SCOP  4->111 1b9mA1 a.4.5.8 * 2.1e-23 38.1 %
:HMM:SCOP  86->292 1uthA_ c.94.1.1 * 2e-21 24.5 %
:RPS:PFM   6->64 PF00126 * HTH_1 4e-08 45.8 %
:HMM:PFM   88->289 PF03466 * LysR_substrate 2.6e-29 27.5 200/209  
:HMM:PFM   6->65 PF00126 * HTH_1 9.8e-24 46.7 60/60  
:BLT:SWISS 4->193 ALSR_BACSU 5e-20 30.2 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD56998.1 GT:GENE BAD56998.1 GT:PRODUCT putative transcriptional regulator GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 2324112..2325029 GB:FROM 2324112 GB:TO 2325029 GB:DIRECTION + GB:PRODUCT putative transcriptional regulator GB:PROTEIN_ID BAD56998.1 LENGTH 305 SQ:AASEQ MVDLNLRLVSYLVTVLDEGHFGRAAQRLYISTPALSQQIRKLEQKLGVELIDRSAHPLQPTPAGRRFLPEARAALAAAQRAVGAVRAEGETLRIGFMTAALATRTRPLLDLVRRESGVATIELVELGWAEQASAVRDGKVDASLMRPPVADAGGLRLDVLCKEPRVVALPVAHRLADRDSISVDELDGEPHLTDREADREWVRWWACDPRPSGRPVVYGPSVRTIDELLEVVATGVAISITSKFVQDTHRHPDVVFVPVRDVEPASLCLCTRAEDSSPLIEALRDAARRIAEFDLDTAASTGAQR GT:EXON 1|1-305:0| BL:SWS:NREP 1 BL:SWS:REP 4->193|ALSR_BACSU|5e-20|30.2|189/302| SEG 65->89|rrflpearaalaaaqravgavraeg| BL:PDB:NREP 2 BL:PDB:REP 5->64|3hhgG|1e-07|36.7|60/294| BL:PDB:REP 90->294|2h9bA|3e-08|27.3|194/216| RP:PDB:NREP 1 RP:PDB:REP 3->206|1bi3A|8e-16|12.6|199/211| RP:PFM:NREP 1 RP:PFM:REP 6->64|PF00126|4e-08|45.8|59/60|HTH_1| HM:PFM:NREP 2 HM:PFM:REP 88->289|PF03466|2.6e-29|27.5|200/209|LysR_substrate| HM:PFM:REP 6->65|PF00126|9.8e-24|46.7|60/60|HTH_1| GO:PFM:NREP 2 GO:PFM GO:0003700|"GO:transcription factor activity"|PF00126|IPR000847| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF00126|IPR000847| RP:SCP:NREP 2 RP:SCP:REP 1->64|1b9mA1|1e-12|20.3|64/122|a.4.5.8| RP:SCP:REP 91->288|1i69A|2e-15|20.0|190/206|c.94.1.1| HM:SCP:REP 4->111|1b9mA1|2.1e-23|38.1|105/0|a.4.5.8|1/1|"Winged helix" DNA-binding domain| HM:SCP:REP 86->292|1uthA_|2e-21|24.5|204/0|c.94.1.1|1/1|Periplasmic binding protein-like II| OP:NHOMO 693 OP:NHOMOORG 314 OP:PATTERN -------------------------------------------------------------------- -1--8-11------31-----1---5------31116876-3341--1-1--1112------2-71A373------------1----------1-----1--------1----------------------------11-----1-1-------------------31-2---------------------21122222-11121212---113-1221111-1--------1----------------------------------------------------------------------------------------------1------------------------------------------------1--------2-221----1---------------111113121-1-311---121--1131---13---1--111111111-1--1-2-------------------------------133--131265668952555577765555378272514--532-211-43311-3311-1-1111111-1------1---------1111----1-1---11-115-----------------------------112--1----1-------1---------------112------32131113331311133-33233-133331333233-22112-11111111111111111132112221--2---------------11111-------12---------------4434433-1-2155562352122212132-------------11--1------11144441111111----------------------------------------------------------- --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------2-----2---- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 302 STR:RPRED 99.0 SQ:SECSTR ccHHHHHHHHHHHHHTccccHHHHHHHHTccHHHHHHHHHHHHHTTcEEEcTTccEEEcHHHHHHHHHHHHHHHHHHHHHHHTTcccHHHHHHHHHHTTTccHHHHHHHHHHccccccccTTccccTTHHHHTcccEEHHHHcccccEEEEEEEEccGGGccccTHHHHHHHTTccTTcEEEEccccEEEETTETTcEEEccHHHHGGHHHHcTTccTTcEEEEEEcGGGcEEEcccEEEEEGGGccTTTcTTcEEEEccTTccEEEEEEEETTcccHHHHHHHHHHcTTccHHHHHHHHHc### DISOP:02AL 296-305| PSIPRED cccccHHHHHHHHHHHHcccHHHHHHHHcccccHHHHHHHHHHHHHccEEEEEcccccEEcHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEEHHHHHHHHHHHHHHHHHHHccccEEEEEEccHHHHHHHHHcccEEEEEEEccccccccEEEEEEEcccEEEEEcccccccccccccHHHHccccEEEEcccccHHHHHHHHHHHHccccEEEEEEEcHHHHHHHHHHcccHHHHHHHHHHHHcccccEEEEEccccccEEEEEEEEcccccHHHHHHHHHHHHHHHHHccccccccccc //