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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD57011.1
DDBJ      :             putative phenylacetic acid degradation NADH oxidoreductase
Swiss-Prot:             

Homologs  Archaea  6/68 : Bacteria  471/915 : Eukaryota  150/199 : Viruses  0/175   --->[See Alignment]
b.43.4c.25.1d.15.4
:365 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   18->362 2piaA PDBj 3e-21 32.1 %
:RPS:PDB   16->265 1cqxA PDBj 8e-44 24.2 %
:RPS:PDB   275->365 1e10A PDBj 9e-23 34.1 %
:RPS:SCOP  16->116 1ep1B1  b.43.4.2 * 1e-16 18.4 %
:RPS:SCOP  119->254 1gvhA3  c.25.1.5 * 5e-23 20.0 %
:RPS:SCOP  246->364 1doiA  d.15.4.1 * 9e-20 23.9 %
:HMM:SCOP  6->121 1i7pA1 b.43.4.2 * 5e-24 32.5 %
:HMM:SCOP  106->252 1i7pA2 c.25.1.1 * 2.1e-41 41.0 %
:HMM:SCOP  244->362 1doiA_ d.15.4.1 * 5e-27 42.5 %
:RPS:PFM   22->116 PF00970 * FAD_binding_6 2e-09 44.4 %
:RPS:PFM   128->232 PF00175 * NAD_binding_1 3e-07 33.0 %
:RPS:PFM   281->352 PF00111 * Fer2 4e-06 35.3 %
:HMM:PFM   128->236 PF00175 * NAD_binding_1 7.3e-19 30.2 106/109  
:HMM:PFM   293->354 PF00111 * Fer2 9.1e-17 40.0 60/77  
:HMM:PFM   21->117 PF00970 * FAD_binding_6 1.3e-16 31.6 95/99  
:BLT:SWISS 18->365 PAAE_ECOLI 2e-73 43.9 %
:PROS 312->320|PS00197|2FE2S_FER_1

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD57011.1 GT:GENE BAD57011.1 GT:PRODUCT putative phenylacetic acid degradation NADH oxidoreductase GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 2335080..2336177 GB:FROM 2335080 GB:TO 2336177 GB:DIRECTION + GB:PRODUCT putative phenylacetic acid degradation NADH oxidoreductase GB:PROTEIN_ID BAD57011.1 LENGTH 365 SQ:AASEQ MSAPVQTARTRPARHRAFHDLRVADVERLCDDAVAVTLDVPAELAEEFAFRPGQSLTVRRVLDGVEHRRSYSICAPVGAPPRIGVRRVAGGAVSTWLVDQLRPGDRIEVQGPSGTFAADPDAGGRHLLIAAGSGITPMLSIAASVLAHPDSEVVLLYGNRRVRSVMFVDEIADLKDRYGDRIEVVHVLSREPRDVELFTGRLDAERLRAILSTVVPIGDIDHAWLCGPFGMVTDARAVLAEFGVAPERVHFELFFVEDAPPPQAEHREPGVEGPTSSVTVVLDGRSTTGLLPRDRSILDAAEQIRSDLPFACKGGVCGTCRAKITGGEADMRRNYALEDAEVADGFVLTCQTYPVSDSVVVDFDA GT:EXON 1|1-365:0| BL:SWS:NREP 1 BL:SWS:REP 18->365|PAAE_ECOLI|2e-73|43.9|344/356| PROS 312->320|PS00197|2FE2S_FER_1|PDOC00175| BL:PDB:NREP 1 BL:PDB:REP 18->362|2piaA|3e-21|32.1|308/321| RP:PDB:NREP 2 RP:PDB:REP 16->265|1cqxA|8e-44|24.2|244/403| RP:PDB:REP 275->365|1e10A|9e-23|34.1|91/128| RP:PFM:NREP 3 RP:PFM:REP 22->116|PF00970|2e-09|44.4|90/99|FAD_binding_6| RP:PFM:REP 128->232|PF00175|3e-07|33.0|100/107|NAD_binding_1| RP:PFM:REP 281->352|PF00111|4e-06|35.3|68/71|Fer2| HM:PFM:NREP 3 HM:PFM:REP 128->236|PF00175|7.3e-19|30.2|106/109|NAD_binding_1| HM:PFM:REP 293->354|PF00111|9.1e-17|40.0|60/77|Fer2| HM:PFM:REP 21->117|PF00970|1.3e-16|31.6|95/99|FAD_binding_6| GO:PFM:NREP 6 GO:PFM GO:0016491|"GO:oxidoreductase activity"|PF00970|IPR008333| GO:PFM GO:0055114|"GO:oxidation reduction"|PF00970|IPR008333| GO:PFM GO:0016491|"GO:oxidoreductase activity"|PF00175|IPR001433| GO:PFM GO:0055114|"GO:oxidation reduction"|PF00175|IPR001433| GO:PFM GO:0009055|"GO:electron carrier activity"|PF00111|IPR001041| GO:PFM GO:0051536|"GO:iron-sulfur cluster binding"|PF00111|IPR001041| RP:SCP:NREP 3 RP:SCP:REP 16->116|1ep1B1|1e-16|18.4|98/101|b.43.4.2| RP:SCP:REP 119->254|1gvhA3|5e-23|20.0|135/143|c.25.1.5| RP:SCP:REP 246->364|1doiA|9e-20|23.9|113/128|d.15.4.1| HM:SCP:REP 6->121|1i7pA1|5e-24|32.5|114/125|b.43.4.2|1/1|Riboflavin synthase domain-like| HM:SCP:REP 106->252|1i7pA2|2.1e-41|41.0|144/0|c.25.1.1|1/1|Ferredoxin reductase-like, C-terminal NADP-linked domain| HM:SCP:REP 244->362|1doiA_|5e-27|42.5|113/128|d.15.4.1|1/1|2Fe-2S ferredoxin-like| OP:NHOMO 1886 OP:NHOMOORG 627 OP:PATTERN ----------------------------1---------------1----1-1--11------------ 13125-12224--197656-5B--8C555557ACBCC6QI23161113----534331--645-445663------------1----------------21111121421------------------------------------3523221112221232221213133111-11111-11--1-------2111111111111111--1111111-1111--------11---------------1--------------------------------------------------------------------------------------1-1--------------------1--------------1-23--------214491-1211111111111-113-45335724-2--42222154346837---1351--1-2311111111611121---------------------------------241-38466978A8A75556999E555536E8G6G89--75555-41653348251321221---------13A6----1--1---111----------1121-2-------------------------1-223321223121222222-2232211123114----211------22121224332422244-344432243432333433567632122222222222222222233333333--222222222323---------1222-22341111-1---------3545523-1-6-756744335775722321--------11323222222323322223222221111----33--------------1-------------------------1-111-1------ 11--32--2---112234245536855-112121--1----111--223777562432233312432421122232223214442411-23231113132211212--616-4212--21-22-3--1-8E3-111--1-2-111--11-11-3-41-1------2-4---21212343L1122426DD223-153221 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 359 STR:RPRED 98.4 SQ:SECSTR ####HHTTcccTTcccccEEEEEEEEEEccccEEEEEEEETTTccccccccTTcEEEEEETTTTEEEEEEEEccccccccEEEEEEcccccHHHHHHHHHccTTcEEEEccccccccccTTccccEEEEEccccHHHHHHHHHHHTccccccEEEEEEEccccccHHHHHHHHHHHHcTTTEEEEEEEccccTTcccTTTccEEccccGGGcHHHHccTTcEEEEEccHHHHHHHHHHHHHTTccGGGEEEcccHHHHcccTTccTcHHHHH##HHHHHHTccTTTEEEEccTTcEEHHHHHHHTccccccccHHHHHHHGGGcccHHHHcHHHHHHHHcHHHHHHHTGGGTccHHHEEEEEEcG DISOP:02AL 1-13, 262-273| PSIPRED cccccccccccccccccEEEEEEEEEEEccccEEEEEEEEccccccccccccccEEEEEEEEcccccEEEEEEEccccccEEEEEEEEcccccHHHHHHHcccccEEEEEEcccEEEEcccccccEEEEEEcHHHHHHHHHHHHHHHcccccEEEEEEEccHHHHHHHHHHHHHHHHccccEEEEEEEcccccccccccccccHHHHHHHHHHHcccccccEEEEEccHHHHHHHHHHHHHHcccHHHEEEEccccccccccccccccccccccccEEEEEEccccEEEEEcccccHHHHHHHcccccccccccccccccEEEEEEccEEccccccccHHHHHcccEEEEEEEEcccEEEEEEcc //