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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD57031.1
DDBJ      :             putative transcriptional regulator
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  27/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
a.4.5d.110.2
:248 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   11->221 1mkmB PDBj 4e-09 22.4 %
:RPS:PDB   19->57 3dp7B PDBj 2e-05 23.1 %
:RPS:PDB   81->223 3bjnA PDBj 1e-08 17.2 %
:RPS:SCOP  13->76 1mkmA1  a.4.5.33 * 3e-06 23.8 %
:RPS:SCOP  92->223 1td5A  d.110.2.2 * 5e-11 23.5 %
:HMM:SCOP  12->86 1mkmA1 a.4.5.33 * 7.9e-11 33.8 %
:HMM:SCOP  70->247 1tf1A_ d.110.2.2 * 2.8e-18 32.0 %
:RPS:PFM   139->223 PF01614 * IclR 1e-04 34.1 %
:HMM:PFM   139->227 PF01614 * IclR 3.7e-22 38.2 89/129  
:HMM:PFM   14->63 PF09339 * HTH_IclR 5.2e-13 30.0 50/52  
:BLT:SWISS 12->223 KDGR_ERWCH 2e-10 28.7 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD57031.1 GT:GENE BAD57031.1 GT:PRODUCT putative transcriptional regulator GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(2354491..2355237) GB:FROM 2354491 GB:TO 2355237 GB:DIRECTION - GB:PRODUCT putative transcriptional regulator GB:PROTEIN_ID BAD57031.1 LENGTH 248 SQ:AASEQ MSPLRDPSRHHPSTVSNSLRILEAVACLGLGVTAKEIAAALHMPAATAYRLLNALVAEEYLVRTSDLRGFGLGARLDGLISAAAQPRVPFAARAAIEELRASVRFGVHVIGFRATTLHVIDADPDHPVRAERELVRHPHASAAGKLLLAHDTEALATLPARLPRLTPATVTHPATLHAQLEAVRRDGLATQTDELETGLTCAALPIADETEVVRGALCLAGPSARAEAILAHLDAAARCAKILGPLLY GT:EXON 1|1-248:0| BL:SWS:NREP 1 BL:SWS:REP 12->223|KDGR_ERWCH|2e-10|28.7|209/305| SEG 154->169|alatlparlprltpat| SEG 224->240|araeailahldaaarca| BL:PDB:NREP 1 BL:PDB:REP 11->221|1mkmB|4e-09|22.4|210/247| RP:PDB:NREP 2 RP:PDB:REP 19->57|3dp7B|2e-05|23.1|39/350| RP:PDB:REP 81->223|3bjnA|1e-08|17.2|134/155| RP:PFM:NREP 1 RP:PFM:REP 139->223|PF01614|1e-04|34.1|85/127|IclR| HM:PFM:NREP 2 HM:PFM:REP 139->227|PF01614|3.7e-22|38.2|89/129|IclR| HM:PFM:REP 14->63|PF09339|5.2e-13|30.0|50/52|HTH_IclR| RP:SCP:NREP 2 RP:SCP:REP 13->76|1mkmA1|3e-06|23.8|63/75|a.4.5.33| RP:SCP:REP 92->223|1td5A|5e-11|23.5|132/179|d.110.2.2| HM:SCP:REP 12->86|1mkmA1|7.9e-11|33.8|74/0|a.4.5.33|1/1|"Winged helix" DNA-binding domain| HM:SCP:REP 70->247|1tf1A_|2.8e-18|32.0|172/0|d.110.2.2|1/1|GAF domain-like| OP:NHOMO 41 OP:NHOMOORG 27 OP:PATTERN -------------------------------------------------------------------- ------------------------------------2263------1-----2---------1-123-------------------------------------------------------------------------------------------------------------------------1---1-----------------1--------1------------------------------------------------------------------------------------------------------------------------------------------------1----1----------------------1-------------------------------------1-1------121----11-----------------------------------------------------------------------------------------------1----------------------------------------------1-----------------------------------------------------------------------------------------------------------------------------------------------1------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 213 STR:RPRED 85.9 SQ:SECSTR ##########cTTHHHHHTTHHHHHHHcTTcEEHHHHHHHHTcccHHHHHHHHHHHHTTcccEEETTTEEEcccccccccccTTTcTTHHHHHHHHHHHHHHHccEEEEETTEEEEEEEccccccccccccTTcEEETTcHHHHHHHHHcHHHHHHHHHHTTcGGGccccTTcHHHHHHHHHHHHHTcEEEEccccTTEEEEEEEEETTETEEEEEEEEEEHH######################### DISOP:02AL 1-15| PSIPRED cccccccccccHHHHHHHHHHHHHHHcccccccHHHHHHHHcccHHHHHHHHHHHHHHHHHEEcccccEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccEEEEEEEcccEEEEEEccccEEEEEEEcccccHHHHHHHHHHHHcccHHHHHHHHHHHHccccccccHHHHHHHHHHHHHcccEEEcccHHccHHEEEEEEEcccccEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc //