[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD57032.1
DDBJ      :             putative transporter
Swiss-Prot:             

Homologs  Archaea  1/68 : Bacteria  26/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
:488 amino acids
:PSIPRED
:DISOPRED
:RPS:PFM   233->343 PF00324 * AA_permease 5e-05 25.2 %
:HMM:PFM   48->432 PF00324 * AA_permease 7.3e-33 20.6 378/479  
:BLT:SWISS 83->347 STET_BACSU 1e-09 29.7 %
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD57032.1 GT:GENE BAD57032.1 GT:PRODUCT putative transporter GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(2355234..2356700) GB:FROM 2355234 GB:TO 2356700 GB:DIRECTION - GB:PRODUCT putative transporter GB:PROTEIN_ID BAD57032.1 LENGTH 488 SQ:AASEQ MPEAQGRQLIAEQSPVRGLDRRRLPFAPVLAQSVAAVAPAGTAGVTPALVLATAGGGGALVAFVCAAVLTLLVSACVRPMAQRMASVGGLYTYVARGLGPKAAVPTGWSAIVGYGAVSIAGLIAVGAYLAHVAASIGLARGTPAVAVGAVAVTAALAVGVVLIRGIRMSAWTTLGVECVSIVIVAAVLLVLMTTHHADAPVGSAFTFDGDLQILAVGVVVAVSAFVGFESSTTLSGEAQQPFRSIPRSVTWTPLLSAAIYLTAVPILAIALRHAPPAVRESSTPLVELLVSDGSRLLAAFLDLGIAASFFACTLASMNALVRVLFCMGREGVAPRTFGHVHPRFRTPSHAALAALAVVAVVPVVVLAVGATPEEGLRAFLTLSACGYLGSYFAVCVSAPVLLRRIGENSARVWVLGTLTSVLLLFLAGNAAISTVRDGNRVILVYGLIMAVAVLYTGYLAVVAPRRLAAVGIYDETQRSDLARVATFR GT:EXON 1|1-488:0| BL:SWS:NREP 1 BL:SWS:REP 83->347|STET_BACSU|1e-09|29.7|236/438| TM:NTM 12 TM:REGION 27->49| TM:REGION 58->80| TM:REGION 111->133| TM:REGION 146->168| TM:REGION 172->193| TM:REGION 211->232| TM:REGION 252->274| TM:REGION 306->328| TM:REGION 350->372| TM:REGION 380->402| TM:REGION 411->433| TM:REGION 442->464| SEG 27->73|apvlaqsvaavapagtagvtpalvlataggggalvafvcaavltllv| SEG 144->162|avavgavavtaalavgvvl| SEG 181->191|ivivaavllvl| SEG 215->231|avgvvvavsafvgfess| SEG 350->370|aalaalavvavvpvvvlavga| SEG 414->426|vlgtltsvlllfl| SEG 459->470|lavvaprrlaav| RP:PFM:NREP 1 RP:PFM:REP 233->343|PF00324|5e-05|25.2|111/429|AA_permease| HM:PFM:NREP 1 HM:PFM:REP 48->432|PF00324|7.3e-33|20.6|378/479|AA_permease| GO:PFM:NREP 3 GO:PFM GO:0006810|"GO:transport"|PF00324|IPR004841| GO:PFM GO:0016020|"GO:membrane"|PF00324|IPR004841| GO:PFM GO:0055085|"GO:transmembrane transport"|PF00324|IPR004841| OP:NHOMO 35 OP:NHOMOORG 27 OP:PATTERN -------------------------------------------1------------------------ --------------1---------12----------1-32------------2--------------111----------------------------------------------------------------------------------------------1--------------------------1-------------------------1--------------------------------------------------------1--------------------------------------------------------------------------------------------------------------12----------------------------------------------------------------------1-----------------------------------------------1----1---------------1----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------12121----1-------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- DISOP:02AL 1-24| PSIPRED cccccccccHHHccHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHcccccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHccc //