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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD57045.1
DDBJ      :             putative transcriptional regulator
Swiss-Prot:             

Homologs  Archaea  1/68 : Bacteria  138/915 : Eukaryota  2/199 : Viruses  0/175   --->[See Alignment]
a.121.1a.4.1
:234 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   21->202 3dcfB PDBj 1e-14 26.2 %
:RPS:PDB   20->200 3br6A PDBj 6e-21 11.1 %
:RPS:SCOP  13->87 3c07A1  a.4.1.9 * 2e-14 30.7 %
:RPS:SCOP  88->201 1pb6A2  a.121.1.1 * 6e-14 15.8 %
:HMM:SCOP  12->88 2gfnA1 a.4.1.9 * 3.9e-15 36.4 %
:HMM:SCOP  90->203 1vi0A2 a.121.1.1 * 9.9e-17 25.4 %
:RPS:PFM   22->68 PF00440 * TetR_N 9e-07 40.4 %
:RPS:PFM   135->182 PF08360 * TetR_C_5 2e-04 35.4 %
:HMM:PFM   22->67 PF00440 * TetR_N 2.5e-18 45.7 46/47  
:BLT:SWISS 21->154 TTGR_PSEPK 3e-11 29.1 %
:PROS 34->65|PS01081|HTH_TETR_1

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD57045.1 GT:GENE BAD57045.1 GT:PRODUCT putative transcriptional regulator GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 2372076..2372780 GB:FROM 2372076 GB:TO 2372780 GB:DIRECTION + GB:PRODUCT putative transcriptional regulator GB:PROTEIN_ID BAD57045.1 LENGTH 234 SQ:AASEQ MTTNARAGSQSTSRRELVEREIMEQATRLFAEKGFAGTTLQDIAVATGLTRPALYHYVANKDELLARLVTEIAEQPAQLLHTINERDDLDPAQRLREMALSIARHQMQAPERFRLLIRSEAELPESLANTYRSSRRRVLKEFVGVIDDGIRAGQFFPVDSRTAALGIIGMLNWIAWWHHPGDQNGRAAATQLAEMAVRTVIDPEADAMGEAGPRRILERLRQNLDSLEQTLGAI GT:EXON 1|1-234:0| BL:SWS:NREP 1 BL:SWS:REP 21->154|TTGR_PSEPK|3e-11|29.1|134/210| PROS 34->65|PS01081|HTH_TETR_1|PDOC00830| BL:PDB:NREP 1 BL:PDB:REP 21->202|3dcfB|1e-14|26.2|172/181| RP:PDB:NREP 1 RP:PDB:REP 20->200|3br6A|6e-21|11.1|180/185| RP:PFM:NREP 2 RP:PFM:REP 22->68|PF00440|9e-07|40.4|47/47|TetR_N| RP:PFM:REP 135->182|PF08360|2e-04|35.4|48/130|TetR_C_5| HM:PFM:NREP 1 HM:PFM:REP 22->67|PF00440|2.5e-18|45.7|46/47|TetR_N| GO:PFM:NREP 4 GO:PFM GO:0003700|"GO:transcription factor activity"|PF00440|IPR001647| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF00440|IPR001647| GO:PFM GO:0003700|"GO:transcription factor activity"|PF08360|IPR013571| GO:PFM GO:0016481|"GO:negative regulation of transcription"|PF08360|IPR013571| RP:SCP:NREP 2 RP:SCP:REP 13->87|3c07A1|2e-14|30.7|75/75|a.4.1.9| RP:SCP:REP 88->201|1pb6A2|6e-14|15.8|114/126|a.121.1.1| HM:SCP:REP 12->88|2gfnA1|3.9e-15|36.4|77/0|a.4.1.9|1/1|Homeodomain-like| HM:SCP:REP 90->203|1vi0A2|9.9e-17|25.4|114/0|a.121.1.1|1/1|Tetracyclin repressor-like, C-terminal domain| OP:NHOMO 229 OP:NHOMOORG 141 OP:PATTERN --------------------------1----------------------------------------- --3--------1--33211-11--2211111123336286-4-21---------1-------11-221-222---1------11------------------------1---------------------------11111------------------------------------------11211---1--------------------------123-2---1111-2----------------------------1-----11------1----------------------------------------------------------------1-----------2-11-11-----1------------1----------11----2122------------------1----3----1-----2---2-1-1-1--11111-------------1---------------------------------32---3131---1---------11------2-31211--33222---5-3222--------------------1--2----1---------------------21----------------------------------------------------------------------------------------------------------------11--------------------------------------------------------------------------------1---1-11-1--11-212--1--------------------------11----------------------------------------------------------------------- --------------------------------------------------------------------------------------------------------------------------------------------------------------1-----------------------------1---------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 221 STR:RPRED 94.4 SQ:SECSTR ####cTcccccccccHHHHHHHHHHHHHHHHHHcTTTccHHHHHHHTTccHHHHHHHTccHHHHHHHHHHHHHHHHHHHHHHHHGGGcccHHHHHHHHHHHHHHHHTTccHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHTccccccHHHHHHHHHHHHHHHHTcccccHHHHHHHHHHHHHHHHHTTHHHHHHHTTccHHHHHHHHHHHHcH######### DISOP:02AL 1-21, 206-224, 233-234| PSIPRED ccccccccccccccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHcccHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHcccHHHHcccccHHHHHHHHHHHHHHHHHHHccc //