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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD57050.1
DDBJ      :             putative polyprenyl synthase
Swiss-Prot:             

Homologs  Archaea  14/68 : Bacteria  181/915 : Eukaryota  7/199 : Viruses  0/175   --->[See Alignment]
a.128.1
:385 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   94->302 1wy0A PDBj 7e-13 28.6 %
:RPS:PDB   66->327 3cp6A PDBj 1e-30 16.3 %
:RPS:SCOP  70->325 1v4eA  a.128.1.1 * 5e-35 24.1 %
:HMM:SCOP  50->387 1ubyA_ a.128.1.1 * 5e-55 28.7 %
:RPS:PFM   92->320 PF00348 * polyprenyl_synt 2e-17 31.5 %
:HMM:PFM   94->329 PF00348 * polyprenyl_synt 8.7e-35 29.2 226/260  
:BLT:SWISS 95->312 ISPB_SHIFL 8e-13 30.0 %
:PROS 166->177|PS00436|PEROXIDASE_2
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD57050.1 GT:GENE BAD57050.1 GT:PRODUCT putative polyprenyl synthase GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 2377074..2378231 GB:FROM 2377074 GB:TO 2378231 GB:DIRECTION + GB:PRODUCT putative polyprenyl synthase GB:PROTEIN_ID BAD57050.1 LENGTH 385 SQ:AASEQ MDNAALPSAPGPTPHSTRTRGVAVVPYSESVARQQDIDTAPPRPERSADHPAPTRANEGSLLRPCSPIAEQIGQVDRRMREILLTGGEFDDIYRHILTAPGKRVRAGLALACAQLIPSPDAAPVHDALDIACVWEMFHESSLVHDDICDGSPLRRDAPSVPAAFGVRRAARAGFHLAGKALQVLARVIADNPAAFGTVGTAAGVTYLDRLSDLSLGQLVETIPPTVDHRALRGHYARVAAAKTGTLFRLACAYGGTAGALEHDRLRDLMDYAERLAFAFQVMDDVRDVDGGPGLGKDACGDLDRRVPTWPVIEWLAEQRAAVDLWLDPATPTGVLQSALADSGAIARARAHAVATAEAARRALAAFPLSPAKEHLDRLAVRVVTR GT:EXON 1|1-385:0| BL:SWS:NREP 1 BL:SWS:REP 95->312|ISPB_SHIFL|8e-13|30.0|203/323| PROS 166->177|PS00436|PEROXIDASE_2|PDOC00394| SEG 162->174|aafgvrraaragf| SEG 193->205|aafgtvgtaagvt| SEG 338->368|aladsgaiararahavataeaarralaafpl| BL:PDB:NREP 1 BL:PDB:REP 94->302|1wy0A|7e-13|28.6|199/327| RP:PDB:NREP 1 RP:PDB:REP 66->327|3cp6A|1e-30|16.3|258/334| RP:PFM:NREP 1 RP:PFM:REP 92->320|PF00348|2e-17|31.5|216/246|polyprenyl_synt| HM:PFM:NREP 1 HM:PFM:REP 94->329|PF00348|8.7e-35|29.2|226/260|polyprenyl_synt| GO:PFM:NREP 1 GO:PFM GO:0008299|"GO:isoprenoid biosynthetic process"|PF00348|IPR000092| RP:SCP:NREP 1 RP:SCP:REP 70->325|1v4eA|5e-35|24.1|232/280|a.128.1.1| HM:SCP:REP 50->387|1ubyA_|5e-55|28.7|331/0|a.128.1.1|1/1|Terpenoid synthases| OP:NHOMO 210 OP:NHOMOORG 202 OP:PATTERN -----1------------------1----------11------1--1---------1111--11--11 ----1-------111--11-1---2111111111112111--11111--111----1-1111111111111--------------1-1----2-------1------------------------------------------------1-----11---112----1---1--1111-11-1--------1-1----------------1---1---1-11-11111-11------------------111----------------------1-------------------------------------------------------------------------1--1--1-11121--1----------1--11--1----1-1-11111111----------1-----------------------1---1--111-----11-------------1-----------------------------------------1----------------------------211111-1111---1-11-------1111111-11-----1--1--11-------1--1------------------------------------------1--1------------------------1-1---------------------------------------------------------------------------------------------------------1--1-----------111--------111-1------1-----------11111111---------------22111111111111--------------------------------------------------------1-1 ----------------1----------------------------------------------------------------------1----1------1-----------------------------------------------------------------1-1-----------------1------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 269 STR:RPRED 69.9 SQ:SECSTR #################################################################HHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHGGccHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTccEETTEEcGGGcTTTGGGHHHHHHHHHHHHHHHHHHHHTTcHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHTccccTTccHHHHHHHHHHHHHHHccHHHHHHHHTTcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHcccccTTTTTcccHHHHHHHHHccHHHHHHHHHHHHHHH################################################### DISOP:02AL 1-60| PSIPRED ccccccccccccccccccccccccccccccccccccccccccccccccHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHcccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHcccHHHHHHccccHHHHHHHHHHccHHHHHHHHccccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcc //