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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD57055.1
DDBJ      :             putative diphosphomevalonate decarboxylase
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  112/915 : Eukaryota  1/199 : Viruses  0/175   --->[See Alignment]
d.14.1d.58.26
:346 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   24->307 2hk2A PDBj 3e-31 39.8 %
:RPS:PDB   24->308 3d4jB PDBj 4e-11 25.9 %
:RPS:SCOP  24->187 1fi4A1  d.14.1.5 * 2e-23 23.1 %
:RPS:SCOP  207->308 1fi4A2  d.58.26.2 * 1e-17 23.5 %
:HMM:SCOP  16->171 1fi4A1 d.14.1.5 * 4.8e-38 36.8 %
:HMM:SCOP  191->327 1fi4A2 d.58.26.2 * 5.4e-36 40.9 %
:HMM:PFM   110->154 PF00288 * GHMP_kinases_N 1e-10 42.2 45/68  
:HMM:PFM   236->324 PF08544 * GHMP_kinases_C 3.3e-07 27.6 76/82  
:BLT:SWISS 26->306 ERG19_DICDI 4e-12 26.1 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD57055.1 GT:GENE BAD57055.1 GT:PRODUCT putative diphosphomevalonate decarboxylase GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 2382393..2383433 GB:FROM 2382393 GB:TO 2383433 GB:DIRECTION + GB:PRODUCT putative diphosphomevalonate decarboxylase GB:PROTEIN_ID BAD57055.1 LENGTH 346 SQ:AASEQ MTLSPHLNADLAAARADEAVAVAHPNIALIKYWGKRDETAVLPVTASLSLTVNIFPTTTAVALIDGPADIVTLDGKPASGPALARVVRFLDLVRARAGRADRVMVISVNSGPTGAGLASSASGFAALAAAAATVFGLDRDARSLSRLARRGSGSACRSIFGGFAVWHAGEGLGEAGDLGSYAEPVEDGGLDPALVVAVVDAAAKAVSSREAMRRTRATSPLYGAWAASSATDLTRMRAALARGDLAEVGEIAERNALGMHATMLAARPAIRYLSPHSLAVLDRVLALRAEGVPAYATMDAGPNVKILCARADAARVASAVRAVGDFVTTRIGYAGPGVAVTVGGGR GT:EXON 1|1-346:0| BL:SWS:NREP 1 BL:SWS:REP 26->306|ERG19_DICDI|4e-12|26.1|276/391| SEG 9->23|adlaaaradeavava| SEG 114->132|gaglassasgfaalaaaaa| SEG 136->158|gldrdarslsrlarrgsgsacrs| SEG 168->179|ageglgeagdlg| SEG 193->206|alvvavvdaaakav| SEG 278->289|lavldrvlalra| SEG 309->323|aradaarvasavrav| SEG 332->345|gyagpgvavtvggg| BL:PDB:NREP 1 BL:PDB:REP 24->307|2hk2A|3e-31|39.8|279/331| RP:PDB:NREP 1 RP:PDB:REP 24->308|3d4jB|4e-11|25.9|274/368| HM:PFM:NREP 2 HM:PFM:REP 110->154|PF00288|1e-10|42.2|45/68|GHMP_kinases_N| HM:PFM:REP 236->324|PF08544|3.3e-07|27.6|76/82|GHMP_kinases_C| RP:SCP:NREP 2 RP:SCP:REP 24->187|1fi4A1|2e-23|23.1|160/188|d.14.1.5| RP:SCP:REP 207->308|1fi4A2|1e-17|23.5|102/203|d.58.26.2| HM:SCP:REP 16->171|1fi4A1|4.8e-38|36.8|155/188|d.14.1.5|1/1|Ribosomal protein S5 domain 2-like| HM:SCP:REP 191->327|1fi4A2|5.4e-36|40.9|137/203|d.58.26.2|1/1|GHMP Kinase, C-terminal domain| OP:NHOMO 113 OP:NHOMOORG 113 OP:PATTERN -------------------------------------------------------------------- ------------1-----------1------1----1-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1--111111---11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111-------------------------------------------------1------------------------------------------------1---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------11-------------------------------------------------------------1-------------------------------------------------------------------------------------------------11111--------------------------------------------------------------1------------------------------------------------1-------------------------------------- -----1------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 285 STR:RPRED 82.4 SQ:SECSTR #######################ccEEEEEccccEEETTTTEEcccEEEEEcTccEEEEEEEcTTccccEEEETTEEEcTTcHHTcHHHHHHHHHHHHHcccEEEEEEEccccccHHHHHHHHHHHHHHHHHHHHHHTTcccccHHHHHTTcGGGGGGccccEEEEcccccTTcccccEEEEEcTTccTTTEEEEEEEEccccccccHHHHHHHHHHHcHHHHHHHHHTHHHHHHHHHHHHTTcHHHHHHHHHHHHHHHHHHHHTcccccccccHHHHHHHHHHHHHHHTcccEEEEEcccccEEEEE###################################### DISOP:02AL 1-6| PSIPRED ccccccccHHHHHccccEEEEEEccEEEEEEccccccHHHcccccccHHEEEEcccEEEEEEEcccccEEEEEccEEcccHHHHHHHHHHHHHHHHHcccccEEEEEEEccccccccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHcccHHHHHHHHHHHHcccccccccccEEEEEEccccccccEEEEEEEcccccccccHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHcccccEEEEcHHHHHHHHHHHHHHHcccEEEEEEccccEEEEEEEcccHHHHHHHHHHHccccEEEEcccccEEEEEEcccc //