[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD57057.1
DDBJ      :             putative isopentenyldiphosphate isomerase
Swiss-Prot:IDI2_NOCFA   RecName: Full=Isopentenyl-diphosphate delta-isomerase;         Short=IPP isomerase;         EC=5.3.3.2;AltName: Full=Isopentenyl pyrophosphate isomerase;

Homologs  Archaea  60/68 : Bacteria  226/915 : Eukaryota  3/199 : Viruses  0/175   --->[See Alignment]
c.1.4
:362 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   27->349 1p0kB PDBj 9e-50 39.9 %
:RPS:PDB   9->323 3dh7A PDBj 3e-72 32.5 %
:RPS:SCOP  24->349 1p0kA  c.1.4.1 * 4e-75 41.1 %
:HMM:SCOP  22->349 1p0kA_ c.1.4.1 * 1.1e-81 34.6 %
:RPS:PFM   236->323 PF01070 * FMN_dh 8e-09 47.1 %
:HMM:PFM   16->96 PF01070 * FMN_dh 1.8e-10 25.3 79/355  
:HMM:PFM   153->325 PF01070 * FMN_dh 3.9e-21 32.0 150/355  
:BLT:SWISS 1->362 IDI2_NOCFA 0.0 100.0 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD57057.1 GT:GENE BAD57057.1 GT:PRODUCT putative isopentenyldiphosphate isomerase GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 2384533..2385621 GB:FROM 2384533 GB:TO 2385621 GB:DIRECTION + GB:PRODUCT putative isopentenyldiphosphate isomerase GB:PROTEIN_ID BAD57057.1 LENGTH 362 SQ:AASEQ MSSNRKDDHVRHAVDQHRDRTPVNDFDAIGFQHHALAGIDAADVDLGVDIAGKRWHTPLFINAMTGGSAAATDINRGLAIAARETGLPVASGSLSAYFRDPGLAGSFRVLREENPHGVVIANVNATATLDQARRAVDLLAADALQIHLNAVQEIVMPEGDRSFRSWPRRIEHLAAGVPVPVIVKEVGFGLSRPTVAWLRDAGVAVADVGGRGGTNFARIENDRRPAADFSFLDTWGQSTPACLLDSAEVTGIALVASGGIRSPLDVAKALALGADATGVAGRFLATLLDRGAEGLIETIRAWLDQLRSIATVLGAATPADLRRCDLLITGEVAAFCRLRGIDAAAYAHRSHWWHPSERRSLL GT:EXON 1|1-362:0| SW:ID IDI2_NOCFA SW:DE RecName: Full=Isopentenyl-diphosphate delta-isomerase; Short=IPP isomerase; EC=5.3.3.2;AltName: Full=Isopentenyl pyrophosphate isomerase; SW:GN Name=fni; OrderedLocusNames=NFA_22100; SW:KW Complete proteome; Cytoplasm; Flavoprotein; FMN; Isomerase;Isoprene biosynthesis; NADP. SW:EXACT T SW:FUNC + BL:SWS:NREP 1 BL:SWS:REP 1->362|IDI2_NOCFA|0.0|100.0|362/362| GO:SWS:NREP 3 GO:SWS GO:0005737|"GO:cytoplasm"|Cytoplasm| GO:SWS GO:0016853|"GO:isomerase activity"|Isomerase| GO:SWS GO:0008299|"GO:isoprenoid biosynthetic process"|Isoprene biosynthesis| SEG 129->145|ldqarravdllaadalq| SEG 199->213|rdagvavadvggrgg| BL:PDB:NREP 1 BL:PDB:REP 27->349|1p0kB|9e-50|39.9|303/309| RP:PDB:NREP 1 RP:PDB:REP 9->323|3dh7A|3e-72|32.5|305/318| RP:PFM:NREP 1 RP:PFM:REP 236->323|PF01070|8e-09|47.1|85/328|FMN_dh| HM:PFM:NREP 2 HM:PFM:REP 16->96|PF01070|1.8e-10|25.3|79/355|FMN_dh| HM:PFM:REP 153->325|PF01070|3.9e-21|32.0|150/355|FMN_dh| GO:PFM:NREP 1 GO:PFM GO:0016491|"GO:oxidoreductase activity"|PF01070|IPR000262| RP:SCP:NREP 1 RP:SCP:REP 24->349|1p0kA|4e-75|41.1|302/306|c.1.4.1| HM:SCP:REP 22->349|1p0kA_|1.1e-81|34.6|327/329|c.1.4.1|1/1|FMN-linked oxidoreductases| OP:NHOMO 297 OP:NHOMOORG 289 OP:PATTERN 111111111111111112111111-42----1111111111111111111111111111111111--- ------------1-111----1--12-----111111---------------------------------------------1------------------------------------------1111111111111111---1-11111111111------111-1111------------11111---111111111111111111--11111111---1--11111111-11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111--------------------------111--1----1-1-1-1------1----------------------------------------------1-1----11-------1-----------------------------------------1111111111111---------------------------------------------------------------------------------1-------------------------1-11-------------------------------------------------------------1-----------1------------------------------------------------------------------------------------------1111---------------------------------------------1------------1---------11---------------------------111-11-1--1-------------------------------------- --------211-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 361 STR:RPRED 99.7 SQ:SECSTR HccHHHHHcHHHHHHccccccccccGGGEEEcccTTccccGGGccccEEETTEEEcccEEEcccccGGGTcTcHHHHHHHHHHHHTcEEEEEEcTTGGGcccccccccccTTTcccccEEEEccGTccHHHHHHHHHHHTccEEEEEccHHHHHHTTTcccccTTHHHHHHHTccTccccEEEEcccccccHHHHHHHTcccccEEEccccTcccHHHHHHHHHcccccHHHHTccccHHHHHHHHHTTccccEEEEcccccHHHHHHHHHTTccEEEEcGGGHHHHHcHcHHHHHHHHHHHHHHHHHHHHHHTccccGGGTTGGEEcTTcccTccccccccHHHHHHHHHHHHHHHHHHH# DISOP:02AL 1-3, 361-362| PSIPRED cccHHHHHHHHHHccHHHHccccccHHHEEEcccccccccccccccEEEEccEEEcccEEEccccccccHHHHHHHHHHHHHHHcccEEEEEcHHHHHccHHHHHHHHHHHHHcccEEEEEEccccccHHHHHHHHHHHcccEEEEEcccHHHHHHcccccHHHHHHHHHHHHHHHHccEEEEEEccccccHHHHHHHHHccccEEEEcccccccHHHHHHHHcccccccccccccccHHHHHHHHHHHcccEEEEEcccccHHHHHHHHHHcccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHccccHHHHccccEEEcccHHHHHHHccccHHHHHHHHHcccccHHcccc //