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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD57059.1
DDBJ      :             putative 3-hydroxy-3-methylglutaryl-CoA synthase
Swiss-Prot:             

Homologs  Archaea  34/68 : Bacteria  143/915 : Eukaryota  166/199 : Viruses  0/175   --->[See Alignment]
c.95.1
:403 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   6->361 1yslB PDBj 4e-70 39.7 %
:RPS:PDB   25->323 1b65A PDBj 2e-15 9.2 %
:RPS:SCOP  71->171 1eblA1  c.95.1.2 * 3e-19 25.0 %
:RPS:SCOP  171->391 1tvzA2  c.95.1.2 * 6e-30 33.6 %
:HMM:SCOP  5->170 1tvzA1 c.95.1.2 * 4.9e-37 34.3 %
:HMM:SCOP  171->391 1tvzA2 c.95.1.2 * 2.2e-61 36.4 %
:RPS:PFM   6->169 PF01154 * HMG_CoA_synt_N 2e-25 39.3 %
:RPS:PFM   186->326 PF08540 * HMG_CoA_synt_C 3e-22 43.5 %
:HMM:PFM   178->251 PF08540 * HMG_CoA_synt_C 2.1e-08 27.0 74/282  
:HMM:PFM   262->323 PF08540 * HMG_CoA_synt_C 2.1e-13 41.9 62/282  
:HMM:PFM   5->168 PF01154 * HMG_CoA_synt_N 1.3e-17 31.9 163/174  
:BLT:SWISS 74->324 PKSG_BACSU 5e-28 32.5 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD57059.1 GT:GENE BAD57059.1 GT:PRODUCT putative 3-hydroxy-3-methylglutaryl-CoA synthase GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 2386673..2387884 GB:FROM 2386673 GB:TO 2387884 GB:DIRECTION + GB:PRODUCT putative 3-hydroxy-3-methylglutaryl-CoA synthase GB:PROTEIN_ID BAD57059.1 LENGTH 403 SQ:AASEQ MTTTAVGIHDLSFATTHYALDHVLLADRLGVDVDKFRLGIGQETMSVAAADEDVVTLAAAAAAPVLERHGAEGIRTVLLATESGVDQSKSAGLYLHPLIGLPNSARVVELKQACYGGTAGLQFAAGLIARDPTQRVLVIAADVAKYDLDSPGEPTQGAAAVAMLVTADPGIVAIETPSGLYSADIMDFWRPNYRSAALVDGKTSVNAYQKAAQEAWSDYRRRGGRDLGEFAAFCYHQPFTRMAYKAHRHLLESQGHRADPDAIESAVAHTTHYNRTVGNSYTASLYLGLMSLLDHADDLSGRPLAFVSYGSGSVAEFFGGVVVPGYRRHLRTETTRAAIATREPLGYDEYRALHEAGTPTDGRYHALPAQTRRPFRLAAISGHKRIYEAREPLPVTVDQAGAD GT:EXON 1|1-403:0| BL:SWS:NREP 1 BL:SWS:REP 74->324|PKSG_BACSU|5e-28|32.5|249/420| SEG 47->67|vaaadedvvtlaaaaaapvle| SEG 331->343|rtettraaiatre| BL:PDB:NREP 1 BL:PDB:REP 6->361|1yslB|4e-70|39.7|355/383| RP:PDB:NREP 1 RP:PDB:REP 25->323|1b65A|2e-15|9.2|292/363| RP:PFM:NREP 2 RP:PFM:REP 6->169|PF01154|2e-25|39.3|163/173|HMG_CoA_synt_N| RP:PFM:REP 186->326|PF08540|3e-22|43.5|138/238|HMG_CoA_synt_C| HM:PFM:NREP 3 HM:PFM:REP 178->251|PF08540|2.1e-08|27.0|74/282|HMG_CoA_synt_C| HM:PFM:REP 262->323|PF08540|2.1e-13|41.9|62/282|HMG_CoA_synt_C| HM:PFM:REP 5->168|PF01154|1.3e-17|31.9|163/174|HMG_CoA_synt_N| GO:PFM:NREP 4 GO:PFM GO:0004421|"GO:hydroxymethylglutaryl-CoA synthase activity"|PF01154|IPR013528| GO:PFM GO:0008299|"GO:isoprenoid biosynthetic process"|PF01154|IPR013528| GO:PFM GO:0004421|"GO:hydroxymethylglutaryl-CoA synthase activity"|PF08540|IPR013746| GO:PFM GO:0008299|"GO:isoprenoid biosynthetic process"|PF08540|IPR013746| RP:SCP:NREP 2 RP:SCP:REP 71->171|1eblA1|3e-19|25.0|100/174|c.95.1.2| RP:SCP:REP 171->391|1tvzA2|6e-30|33.6|220/221|c.95.1.2| HM:SCP:REP 5->170|1tvzA1|4.9e-37|34.3|166/0|c.95.1.2|1/1|Thiolase-like| HM:SCP:REP 171->391|1tvzA2|2.2e-61|36.4|220/0|c.95.1.2|1/1|Thiolase-like| OP:NHOMO 428 OP:NHOMOORG 343 OP:PATTERN 11-1---1111111111-11111-1111111111---1-------1-------1----------1-11 ----2-------1-----------1-----------1-----------------------------1----------------------------------1---1------------------------------1------------1-------------------1-----------------------2--------------------1-------1--111111---11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111-------------------------------------------------1------------------------------------------1-----1------------------------------------------------------------------------------------------1-------1111-1-------------------------------------------------------------------------32-------------------------------------------------------------1------------1---------------------------------------------------------------------11111111111-----1-----------------------------------------------------------------1--------------------------------------11111111--1-------------------------------------- ----221-211111-1111122222211111--22211-1-1111122111121-1111111111111-1111111111111111111--211--221211-1111114121111-2112122142-3-373-223121-4--321111121112322111111121511411-1--------1123431221112111 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 357 STR:RPRED 88.6 SQ:SECSTR ####cEEEEEEEEEcccEEEEHHHGGGcTTcEEEEEEEEcccccTTcccccEEEEEEEETTTTccccccEEEEEEEEEEccccccHHHHHHHcEEcccEEEEEGGGHHHccHHHHHHHHHHHHTHHHHccccccccccEEEEEccTTTccGGGHHHHHHHHHTcccccccccccGGGTTcEETTEEcEEETEEEEEEEETTEEEEEEEEEEEccccGGGcccTTccHHHHccTTcHHHccEEEEEEEcccccHHHHHHHHHTHHHHHHTTTccHHHHccTTcEEEEEEEEcccccccGGccccccccccccGGGHHHHHHHHHTTGGGcccHHHHHHHHHTcEEccHHHHHHHHHccccTT########################################## DISOP:02AL 1-2, 399-403| PSIPRED cccccEEHEEHEEccccccccHHHHHHHHcccHHHEEEcccEEEEEcccccccHHHHHHHHHHHHHHHcccccccEEEEEEcccccccccHHHHHHHHHccccccEEEEEcccHHHHHHHHHHHHHHHHcccccEEEEEEEHEEEEcccccccccccccEEEEEEEccccEEEEEcccccccHHHcHHccccccccccccccccHHHHHHHHHHHHHHHHHHHcccHHHccEEEEccccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccccccEEEEEEEcHHHHHHHHEEEEcHHHHHHHHHHcHHHHHHccccccHHHHHHHHHHccHHccccccccccccccEEEEEEcccEEEEEEcccccccccccccc //