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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD57062.1
DDBJ      :             putative sigma factor
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  156/915 : Eukaryota  2/199 : Viruses  0/175   --->[See Alignment]
a.177.1a.4.13d.17.4
:298 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:RPS:PDB   5->179 3dxjF PDBj 8e-17 14.3 %
:RPS:PDB   173->289 3ebtA PDBj 2e-05 12.9 %
:RPS:SCOP  5->75 1iw7F3  a.177.1.1 * 3e-07 14.1 %
:RPS:SCOP  112->163 1ku3A  a.4.13.2 * 2e-06 26.9 %
:RPS:SCOP  168->284 3dm8A1  d.17.4.20 * 4e-05 9.4 %
:HMM:SCOP  5->71 1h3lA_ a.177.1.1 * 9.5e-12 34.3 %
:HMM:SCOP  71->174 1iw7F2 a.4.13.2 * 2.3e-11 25.7 %
:HMM:SCOP  167->287 1qjgA_ d.17.4.3 * 9.9e-11 27.8 %
:RPS:PFM   107->157 PF08281 * Sigma70_r4_2 2e-04 37.3 %
:HMM:PFM   13->76 PF04542 * Sigma70_r2 4.3e-16 37.5 64/71  
:HMM:PFM   107->158 PF08281 * Sigma70_r4_2 3.5e-15 32.7 52/54  
:BLT:SWISS 5->157 SIGW_BACSU 4e-06 24.7 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD57062.1 GT:GENE BAD57062.1 GT:PRODUCT putative sigma factor GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(2390646..2391542) GB:FROM 2390646 GB:TO 2391542 GB:DIRECTION - GB:PRODUCT putative sigma factor GB:PROTEIN_ID BAD57062.1 LENGTH 298 SQ:AASEQ MSTADAATDAFVAHRNLLFTVAYEMLGSAADAEDVLQETWLRWRTVDRDQVRDDRAYLVRITTRQSLNRLRTLQRRKESYVGPWLPEPLLTTPDIAEDAELAESLSMAMMLVLETLAPTERAVFVLREVFDFGYDEIAAAVGKTPTAVRQIAHRARKHVEARRPREAVSASRTREVLEQFQRAIETRDLSGLLELLAPEVVLVGDGGGVKQAVLRPILGARKVATLFLGGLRKVPGALTIGLTHVNGSPALVVYLDGELDGVMAVDHDGAHITGMYYVRNPHKLTHLGAETPLTVSRG GT:EXON 1|1-298:0| BL:SWS:NREP 1 BL:SWS:REP 5->157|SIGW_BACSU|4e-06|24.7|150/187| SEG 42->55|rwrtvdrdqvrddr| SEG 192->203|llellapevvlv| RP:PDB:NREP 2 RP:PDB:REP 5->179|3dxjF|8e-17|14.3|168/349| RP:PDB:REP 173->289|3ebtA|2e-05|12.9|116/126| RP:PFM:NREP 1 RP:PFM:REP 107->157|PF08281|2e-04|37.3|51/54|Sigma70_r4_2| HM:PFM:NREP 2 HM:PFM:REP 13->76|PF04542|4.3e-16|37.5|64/71|Sigma70_r2| HM:PFM:REP 107->158|PF08281|3.5e-15|32.7|52/54|Sigma70_r4_2| GO:PFM:NREP 5 GO:PFM GO:0003677|"GO:DNA binding"|PF08281|IPR013249| GO:PFM GO:0003700|"GO:transcription factor activity"|PF08281|IPR013249| GO:PFM GO:0006352|"GO:transcription initiation"|PF08281|IPR013249| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF08281|IPR013249| GO:PFM GO:0016987|"GO:sigma factor activity"|PF08281|IPR013249| RP:SCP:NREP 3 RP:SCP:REP 5->75|1iw7F3|3e-07|14.1|71/184|a.177.1.1| RP:SCP:REP 112->163|1ku3A|2e-06|26.9|52/61|a.4.13.2| RP:SCP:REP 168->284|3dm8A1|4e-05|9.4|117/135|d.17.4.20| HM:SCP:REP 5->71|1h3lA_|9.5e-12|34.3|67/75|a.177.1.1|1/1|Sigma2 domain of RNA polymerase sigma factors| HM:SCP:REP 71->174|1iw7F2|2.3e-11|25.7|101/105|a.4.13.2|1/1|Sigma3 and sigma4 domains of RNA polymerase sigma factors| HM:SCP:REP 167->287|1qjgA_|9.9e-11|27.8|115/125|d.17.4.3|1/1|NTF2-like| OP:NHOMO 313 OP:NHOMOORG 158 OP:PATTERN -------------------------------------------------------------------- -11-G1--------66622-24--352222115444834413251A-1------------432-1157G7------------1----------------------1---1---------------------------11-----1-1-------------------1---------------------------111111-1-111111-111--111-------------14--------------------------------------------------------------------------------------------------------------------------------------------1--1111-------1---111--1-----------1-121-12-1-11-1---111111111------11-11-1--------------1----------------------------------11--111-122221-11111132111111211-1-1--11----111-1-1-----------------------------------------------621433--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1----------------------------------22----------------11---------------------------------------------------1- -------------1------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1---- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 278 STR:RPRED 93.3 SQ:SECSTR ####HHHHHHHHHTHHHHHHHHGGGccccccHHHHHHHHHHHHHHHHHcccTTccHHHHHHHHHHHHHHHHHHcccc##cccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHcTTccHHHHHHHHHHTcccccTTcccTTcccccGGGTccccccc#####cHHHHHHHHHHHHHHHHHHHHHHTTcHHHHHTTEEEEEEEEEcGGGTGGTccEEEEHHHHHHHHHHHGGGTEEEEEEEEEEEEETTEEEEEEETcEEEEEEEEEEETTEEEEEEEEccHHHHHHHcc######### DISOP:02AL 1-3, 163-171, 293-298| PSIPRED cccHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHccccccHHHHccHHccccccccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHcccHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccHHHHHHHccccEEEEEcccccccccccccccHHHHHHHHHHHHcccccccEEEEEEEccccEEEEEEcccEEEEEEEEEEccEEEEEEEEEcHHHHHHHHHccccccccc //