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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD57070.1
DDBJ      :             putative transcriptional regulator
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  63/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
a.4.1
:227 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   30->106 3dcfB PDBj 2e-10 33.8 %
:RPS:PDB   29->126 3btiB PDBj 5e-11 18.4 %
:RPS:SCOP  29->95 1z77A1  a.4.1.9 * 3e-13 28.3 %
:HMM:SCOP  15->103 1t33A1 a.4.1.9 * 5.4e-18 38.6 %
:RPS:PFM   31->77 PF00440 * TetR_N 8e-07 48.9 %
:HMM:PFM   31->77 PF00440 * TetR_N 4.9e-20 48.9 47/47  
:BLT:SWISS 31->87 UIDR_SHIFL 2e-07 35.1 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD57070.1 GT:GENE BAD57070.1 GT:PRODUCT putative transcriptional regulator GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 2399373..2400056 GB:FROM 2399373 GB:TO 2400056 GB:DIRECTION + GB:PRODUCT putative transcriptional regulator GB:PROTEIN_ID BAD57070.1 LENGTH 227 SQ:AASEQ MRQNGEVTSLGPGRPRLAPRRRQGRTPRAEILDAAAELFTTQGYASTSTRAVADAVGIRQASLYHHFAAKDDILEALLAETVSGPLALAERLRAEPVAPAVRLYALARFDVRQLCSARWNLGALYLLPELRSARFAAFRRQRDDLRGHYERFAAEVLAAARAAHAEGAELLPFRMVESVINMRSDEGTAPDYAERLIPEAILHLLGHHDALGAVRAAADDLLDRLDG GT:EXON 1|1-227:0| BL:SWS:NREP 1 BL:SWS:REP 31->87|UIDR_SHIFL|2e-07|35.1|57/196| SEG 11->28|gpgrprlaprrrqgrtpr| SEG 130->146|lrsarfaafrrqrddlr| SEG 153->171|aaevlaaaraahaegaell| SEG 202->226|lhllghhdalgavraaaddlldrld| BL:PDB:NREP 1 BL:PDB:REP 30->106|3dcfB|2e-10|33.8|77/181| RP:PDB:NREP 1 RP:PDB:REP 29->126|3btiB|5e-11|18.4|98/186| RP:PFM:NREP 1 RP:PFM:REP 31->77|PF00440|8e-07|48.9|47/47|TetR_N| HM:PFM:NREP 1 HM:PFM:REP 31->77|PF00440|4.9e-20|48.9|47/47|TetR_N| GO:PFM:NREP 2 GO:PFM GO:0003700|"GO:transcription factor activity"|PF00440|IPR001647| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF00440|IPR001647| RP:SCP:NREP 1 RP:SCP:REP 29->95|1z77A1|3e-13|28.3|60/75|a.4.1.9| HM:SCP:REP 15->103|1t33A1|5.4e-18|38.6|88/0|a.4.1.9|1/1|Homeodomain-like| OP:NHOMO 69 OP:NHOMOORG 63 OP:PATTERN -------------------------------------------------------------------- ----1111111---2--11-1----211111-12222111-1111----1--1-1-----------11-------------11-----------------------------------------------------1-------1-----------------------------------------1--------------1-----------------------------------------------------1---------------------------------------------------------------------------------------------------------------------------------------1----------------------------1------------------------------------------1-------------------------------------111------------------------------------------------------------------------------------------------1---------------------------------1----------------------------------------------------------------------------------------------------------------------------------------1-----------------11111-------1111-1111--------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 101 STR:RPRED 44.5 SQ:SECSTR ############################HHHHHHHHHHHHHcccccccHHHHHHTTTcccTTTTTTcccHHHHHHHHHHHHHHHHHHHHHTTcTTcccHHHHHHHHHHHHHHccccTTTHHHHHHHccH################################################################################################## DISOP:02AL 1-30| PSIPRED cccccccccccccccccccccccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHcccccHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHccc //