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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD57077.1
DDBJ      :             putative transcriptional regulator
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  161/915 : Eukaryota  1/199 : Viruses  0/175   --->[See Alignment]
a.24.16a.4.1
:312 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   213->312 1ti9A PDBj 3e-05 22.2 %
:RPS:PDB   214->312 1bl0A PDBj 9e-20 21.4 %
:RPS:SCOP  214->312 1v4aA1  a.24.16.4 * 5e-14 13.3 %
:HMM:SCOP  210->259 1bl0A1 a.4.1.8 * 1.7e-06 30.0 %
:HMM:SCOP  264->312 1d5yA2 a.4.1.8 * 1.2e-09 37.5 %
:RPS:PFM   280->312 PF00165 * HTH_AraC 9e-04 39.4 %
:HMM:PFM   221->259 PF00165 * HTH_AraC 4.2e-07 30.8 39/42  
:HMM:PFM   278->310 PF00165 * HTH_AraC 3.9e-10 40.6 32/42  
:BLT:SWISS 12->309 THCR_RHOER 9e-36 33.6 %
:PROS 265->308|PS00041|HTH_ARAC_FAMILY_1
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD57077.1 GT:GENE BAD57077.1 GT:PRODUCT putative transcriptional regulator GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 2407630..2408568 GB:FROM 2407630 GB:TO 2408568 GB:DIRECTION + GB:PRODUCT putative transcriptional regulator GB:PROTEIN_ID BAD57077.1 LENGTH 312 SQ:AASEQ MPQHTHITATHDWELAHAAVEQVYFPHRLEPLARPDRLGLTMRSLDLGPVTVGRLTWGTEVAIDCEYPGAYEINIPVTGRLVSTAGDEQIWSEPGQATVFHADRRALIETWSADCRVVGVKFAADFLEREAERIHASTVRGRLRLPHQLDFATPERRSWLRLVRTLSAQLNEPAELLANPLVADGLASSLATAFLLAAMPEENDPVGRMRPRTVKRVLDALHEDPARPWTLAEMAELAGSSVRRVQEAFAEHLGTTPTAALRDIRLARAHAELRTGASRTVADVAARWGFSSPSRFAAAYRRRYGVPPSAAR GT:EXON 1|1-312:0| BL:SWS:NREP 1 BL:SWS:REP 12->309|THCR_RHOER|9e-36|33.6|295/332| PROS 265->308|PS00041|HTH_ARAC_FAMILY_1|PDOC00040| SEG 186->198|lasslatafllaa| BL:PDB:NREP 1 BL:PDB:REP 213->312|1ti9A|3e-05|22.2|99/129| RP:PDB:NREP 1 RP:PDB:REP 214->312|1bl0A|9e-20|21.4|98/116| RP:PFM:NREP 1 RP:PFM:REP 280->312|PF00165|9e-04|39.4|33/40|HTH_AraC| HM:PFM:NREP 2 HM:PFM:REP 221->259|PF00165|4.2e-07|30.8|39/42|HTH_AraC| HM:PFM:REP 278->310|PF00165|3.9e-10|40.6|32/42|HTH_AraC| GO:PFM:NREP 4 GO:PFM GO:0003700|"GO:transcription factor activity"|PF00165|IPR000005| GO:PFM GO:0005622|"GO:intracellular"|PF00165|IPR000005| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF00165|IPR000005| GO:PFM GO:0043565|"GO:sequence-specific DNA binding"|PF00165|IPR000005| RP:SCP:NREP 1 RP:SCP:REP 214->312|1v4aA1|5e-14|13.3|98/151|a.24.16.4| HM:SCP:REP 210->259|1bl0A1|1.7e-06|30.0|50/54|a.4.1.8|1/2|Homeodomain-like| HM:SCP:REP 264->312|1d5yA2|1.2e-09|37.5|48/0|a.4.1.8|1/1|Homeodomain-like| OP:NHOMO 408 OP:NHOMOORG 162 OP:PATTERN -------------------------------------------------------------------- --1-2---------111----3---1------144553B5---111---21-----------1-31--32-----------1-------------------------1-------------------------------------------------------2----2------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1-----1-----11141---1-1-1----------1------111-3--8442666459212---1--42-11-22------------1--1--------------------------------6---11-1A8AA8A411117775222213E882251--112--1--2--112-11--11-------------51-----1----1111--1---------1--2------------------------------2----1----------------------1-------------1--1-2-------------------------------------------------------1----------11111-11-------------------13---------------11111-1-----22221232-2125-----------------------11---221-2------------------------------------------------------------------1- --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1---- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 114 STR:RPRED 36.5 SQ:SECSTR ######################################################################################################################################################################################################HHHHHTTccHHHHHHHHHHHHHHHTTTTcccccHHHHHHccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHcHcccHHHHHHHTTcccHHHHHHHHHHHHcccHHHHH DISOP:02AL 1-2, 197-211, 309-312| PSIPRED ccccccccccccHHHHHHHHHHHHccccccccccccccEEEEEEEEEccEEEEEEEEccEEEEEEcccccEEEEEEEEcEEEEEEccEEEEEcccEEEEEccccccEEEEccccccEEEEEEcHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHcccccHHHHHHHHcccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHccccHHHHHHHHHHHHcccHHHcc //