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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD57080.1
DDBJ      :             hypothetical protein
Swiss-Prot:             

Homologs  Archaea  51/68 : Bacteria  425/915 : Eukaryota  3/199 : Viruses  0/175   --->[See Alignment]
c.1.28
:393 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   5->163 2fb2A PDBj 1e-04 24.8 %
:RPS:PDB   4->296 3ciwA PDBj 3e-24 10.3 %
:RPS:SCOP  5->297 1tv7A  c.1.28.3 * 7e-29 22.5 %
:HMM:SCOP  14->317 1tv8A_ c.1.28.3 * 3.1e-57 32.1 %
:RPS:PFM   21->153 PF04055 * Radical_SAM 1e-07 32.3 %
:HMM:PFM   21->172 PF04055 * Radical_SAM 1.4e-24 27.0 152/166  
:BLT:SWISS 14->337 PQQE_RHIME 7e-22 28.8 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD57080.1 GT:GENE BAD57080.1 GT:PRODUCT hypothetical protein GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(2411302..2412483) GB:FROM 2411302 GB:TO 2412483 GB:DIRECTION - GB:PRODUCT hypothetical protein GB:PROTEIN_ID BAD57080.1 LENGTH 393 SQ:AASEQ MRLVEHFKHGLAAPICLTWELTYACNLACEHCLSSSGRRDPRELSTEECKAVIDELQRMQVFYVNIGGGEPTVRPDFWELLDYSLDHQVGVKFSTNGVRLTPQRARMLAATDYVDVQISIDGATAEVNDAVRGPGSFAMAYRAMGNLADAGFENFKISVVMTRHNVGQLDEFKAIADRFGAQLRITRLRPSGRGADVWDELHPTAEQQLRIYDWLIDNGENVLTGDSFFHLNALGSTPLPGLNLCGAGRVVCLIDPVGDVYACPFAIHDEFLAGNVRDPGGFESVWNTSELFERLRQPQTGGACTACPAYDSCQGGCMAAKFFTGLPLDGPDPECVRGNAEFALATVGADSAPKPDKDHSRRAPARPRAVALGLPGLRVPDRACDTSPISGIH GT:EXON 1|1-393:0| BL:SWS:NREP 1 BL:SWS:REP 14->337|PQQE_RHIME|7e-22|28.8|319/375| SEG 361->371|rraparprava| BL:PDB:NREP 1 BL:PDB:REP 5->163|2fb2A|1e-04|24.8|157/327| RP:PDB:NREP 1 RP:PDB:REP 4->296|3ciwA|3e-24|10.3|290/344| RP:PFM:NREP 1 RP:PFM:REP 21->153|PF04055|1e-07|32.3|133/164|Radical_SAM| HM:PFM:NREP 1 HM:PFM:REP 21->172|PF04055|1.4e-24|27.0|152/166|Radical_SAM| GO:PFM:NREP 2 GO:PFM GO:0003824|"GO:catalytic activity"|PF04055|IPR007197| GO:PFM GO:0051536|"GO:iron-sulfur cluster binding"|PF04055|IPR007197| RP:SCP:NREP 1 RP:SCP:REP 5->297|1tv7A|7e-29|22.5|285/327|c.1.28.3| HM:SCP:REP 14->317|1tv8A_|3.1e-57|32.1|299/0|c.1.28.3|1/1|Radical SAM enzymes| OP:NHOMO 781 OP:NHOMOORG 479 OP:PATTERN 22-51342444444532522222322331422--11-------23-227467421211--1--15-1- 121-1-11------11122-21--1222222121113111-234----1-----------22212-2------------2341-11-11112-2-----------111-1---------------21-22---3-2--------11--2111----------------11---------------1--51--1-11111--1-1-1---1-11-211--12---1---------------------------------------------------1--------2-11-------------------------11111111-53132----1---1-3-22------7--2-123344342343321341--12-----------1111-1-21211--------------2--2-2----1---111---11-1---2-211112-211111111111111-1-----------------------------1---------1211111-111111-11111-2-113221--12121-11----1---11112------------113-33332432243322241343732--2-3349---1----------------1--11--111-1-2----1111111111111-1-112---1---------121-1121111111111-1111111111111111111222111-1111111111111111111111111--111111111111-------------1-11-1111111-1-11111111-111---1-222212211121121111----1----1111-----11111--11111111-------1------------------------------------------2252222221112 ---------------------------------------------------------------------------------------------------------------------------------------------------------------1---------------------1------1---------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 305 STR:RPRED 77.6 SQ:SECSTR #TTHHHHHHccEEEEEEEEEEEcccccccTTcTTcTcccccccccHHHHHHHHHHHHHTTccEEEEEEcccGGTTHHHHHHHHHHHHTTTcEEEEEcccccHHHHHHHHHTTccEEEcccccccHHHHHHHcTTccHHHHHHHHHHHHTTcEEEEccEEccTTccHHHHHHHHHHHHHHTccEccEEccccTTTcTTTTcccccHHHHHHHHHHcTTccccccHHHHHHcTTHTTTccEEccccccTTTGGGccccTTcTTTTccTTcHHHHHHHHHHTTTcEEcccccccccccc#cccccccccc###################################################################################### DISOP:02AL 4-7, 391-393| PSIPRED ccccHHHHccccccEEEEEEEccccccccccccccccccccccccHHHHHHHHHHHHHccccEEEEEcccccHHHHHHHHHHHHHHcccEEEEEEccEEccHHHHHHHHHcccEEEEEEEccccHHHHHHHHccccHHHHHHHHHHHHHccccEEEEEEEEccccHHHHHHHHHHHHHcccEEEEEEEEEccccHHHHHHccccHHHHHHHHHHHHHHHHHccccccEEEEEcccccccccccccccccEEEEEcccccEEEcccccccccccccccccccHHHHHHHHHHHHHHHcHHccccccccccccccccccHHHHHHHcccccccccccEEcHHHHHHHHHHHHHHHccccccccccccccccccccccccccHHHHcccccccccc //