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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD57086.1
DDBJ      :             putative transcriptional regulator
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  58/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
a.121.1a.35.1a.4.1
:287 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   112->283 3himB PDBj 8e-14 30.2 %
:RPS:PDB   40->70 2axuF PDBj 4e-06 32.3 %
:RPS:PDB   104->282 3br5E PDBj 1e-21 15.6 %
:RPS:SCOP  38->70 1y7yA1  a.35.1.3 * 3e-05 24.2 %
:RPS:SCOP  104->171 1z77A1  a.4.1.9 * 6e-11 22.1 %
:RPS:SCOP  170->284 2genA2  a.121.1.1 * 4e-10 19.1 %
:HMM:SCOP  6->79 2b5aA1 a.35.1.3 * 1.9e-14 39.2 %
:HMM:SCOP  88->176 1t33A1 a.4.1.9 * 2.8e-14 31.8 %
:HMM:SCOP  171->285 1vi0A2 a.121.1.1 * 3.8e-16 26.1 %
:HMM:PFM   105->148 PF00440 * TetR_N 1.2e-15 43.2 44/47  
:HMM:PFM   20->73 PF01381 * HTH_3 6.9e-18 42.6 54/55  
:BLT:SWISS 99->159 TETR3_ECOLX 3e-05 34.4 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD57086.1 GT:GENE BAD57086.1 GT:PRODUCT putative transcriptional regulator GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 2417858..2418721 GB:FROM 2417858 GB:TO 2418721 GB:DIRECTION + GB:PRODUCT putative transcriptional regulator GB:PROTEIN_ID BAD57086.1 LENGTH 287 SQ:AASEQ MFGYSEHMDDRPTLPPHEAIRAARRAAGLSLRELARRIEVSPATLSAVENGRTGLSVARLARLAEALGVSPARLLGGAPAVAPGRPAAEHGAWREFGPLDADPVLTAAIASFVDIGYHGTTVRALADRAGTSVPGLYHRYRDKQDLLVRILDLTMGELHWRVRAARAEGRDAVERVRLIVEALALFHSHRRELGFIGASEMRSLLPADRARIARSRTELQHLLDEEIEAGRAAGLITTPHPKAAGRAIATMCTGIAQWFRERGPATPEQIATQYGEFALDLLGARPH GT:EXON 1|1-287:0| BL:SWS:NREP 1 BL:SWS:REP 99->159|TETR3_ECOLX|3e-05|34.4|61/219| SEG 19->37|airaarraaglslrelarr| SEG 71->88|parllggapavapgrpaa| BL:PDB:NREP 1 BL:PDB:REP 112->283|3himB|8e-14|30.2|172/192| RP:PDB:NREP 2 RP:PDB:REP 40->70|2axuF|4e-06|32.3|31/297| RP:PDB:REP 104->282|3br5E|1e-21|15.6|179/186| HM:PFM:NREP 2 HM:PFM:REP 105->148|PF00440|1.2e-15|43.2|44/47|TetR_N| HM:PFM:REP 20->73|PF01381|6.9e-18|42.6|54/55|HTH_3| RP:SCP:NREP 3 RP:SCP:REP 38->70|1y7yA1|3e-05|24.2|33/69|a.35.1.3| RP:SCP:REP 104->171|1z77A1|6e-11|22.1|68/75|a.4.1.9| RP:SCP:REP 170->284|2genA2|4e-10|19.1|115/118|a.121.1.1| HM:SCP:REP 6->79|2b5aA1|1.9e-14|39.2|74/0|a.35.1.3|1/1|lambda repressor-like DNA-binding domains| HM:SCP:REP 88->176|1t33A1|2.8e-14|31.8|88/0|a.4.1.9|2/2|Homeodomain-like| HM:SCP:REP 171->285|1vi0A2|3.8e-16|26.1|115/0|a.121.1.1|1/1|Tetracyclin repressor-like, C-terminal domain| OP:NHOMO 100 OP:NHOMOORG 58 OP:PATTERN -------------------------------------------------------------------- ----21------------------------------5789-4-2------------------5--2-222-----------------------------------------------------------------------------------------------------------------1--11---11-------------------------111----------1-----------------------------------------------------------------------------------------------------------------------1----11--1---------------1--1--------11---1-11---------------1--1---11-------------12---1111111-11-------------1---------------------------------2----1111-------------------------2------------2--1----------------------------------------------------1--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 219 STR:RPRED 76.3 SQ:SECSTR #####################################HTTcHHHHHHHHTTcccccHHHHHHHHHHHTcc###############################HHHHHHHHHHHHHHTTTcccHHHHHHHTTccHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHTTcccHHHHHHHHHHHHHccccTTTTHHHHHHHHHTcccHHHHHHHHHHHHHHHHHHHHHHHHHHTTTccccccHHHHHHHHHHHHHHHHHTcTTccHHHHHHHHHHHHHHHHHTccccHH DISOP:02AL 1-7, 67-100, 286-287| PSIPRED cccccccccccccccHHHHHHHHHccccccHHHHHHHHHHcHHHHHHHHHccccccHHHHHHHHHHHcccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHcccHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHccccc //