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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD57087.1
DDBJ      :             putative short chain dehydrogenase
Swiss-Prot:             

Homologs  Archaea  27/68 : Bacteria  720/915 : Eukaryota  142/199 : Viruses  0/175   --->[See Alignment]
c.2.1
:263 amino acids
:SECSTR
:PSIPRED
:BLT:PDB   18->258 1nffA PDBj 4e-23 36.9 %
:RPS:PDB   3->260 1dohB PDBj 5e-27 19.2 %
:RPS:SCOP  19->260 1pwxA  c.2.1.2 * 3e-27 17.9 %
:HMM:SCOP  1->258 1zemA1 c.2.1.2 * 3.5e-77 41.0 %
:RPS:PFM   18->118 PF00106 * adh_short 3e-09 38.0 %
:HMM:PFM   7->172 PF00106 * adh_short 2.5e-34 35.0 163/167  
:BLT:SWISS 1->262 LIMC_RHOER 4e-41 38.2 %
:PROS 141->169|PS00061|ADH_SHORT
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD57087.1 GT:GENE BAD57087.1 GT:PRODUCT putative short chain dehydrogenase GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 2418873..2419664 GB:FROM 2418873 GB:TO 2419664 GB:DIRECTION + GB:PRODUCT putative short chain dehydrogenase GB:PROTEIN_ID BAD57087.1 LENGTH 263 SQ:AASEQ MNRMQDKVAVVTGAAGGMGRAHCRRLAEEGADIIALDVAGADLDGTAAAVTELGRRCVTAVADVRDQTALDTAIAAGVRALGTLDVVVANAGVYTDLGPSWELTDAAWQRTLDVNLTGVWHTVRAAAAHLAESAAIVIVGSTNGVRGGANAAHYAASKHAVVGLARTLANELGPRGIRVNLVHPGSVATPMILNETVYAKLRPDLAQPTIDDAAAVLAQRTLLPVPWVDPVDVANAVLFLASDEARTVTGTELVVDAGLTQKV GT:EXON 1|1-263:0| BL:SWS:NREP 1 BL:SWS:REP 1->262|LIMC_RHOER|4e-41|38.2|262/277| PROS 141->169|PS00061|ADH_SHORT|PDOC00060| SEG 8->17|vavvtgaagg| SEG 125->135|aaaahlaesaa| SEG 149->160|anaahyaaskha| SEG 224->237|pvpwvdpvdvanav| BL:PDB:NREP 1 BL:PDB:REP 18->258|1nffA|4e-23|36.9|217/244| RP:PDB:NREP 1 RP:PDB:REP 3->260|1dohB|5e-27|19.2|255/271| RP:PFM:NREP 1 RP:PFM:REP 18->118|PF00106|3e-09|38.0|100/169|adh_short| HM:PFM:NREP 1 HM:PFM:REP 7->172|PF00106|2.5e-34|35.0|163/167|adh_short| GO:PFM:NREP 2 GO:PFM GO:0008152|"GO:metabolic process"|PF00106|IPR002198| GO:PFM GO:0016491|"GO:oxidoreductase activity"|PF00106|IPR002198| RP:SCP:NREP 1 RP:SCP:REP 19->260|1pwxA|3e-27|17.9|229/252|c.2.1.2| HM:SCP:REP 1->258|1zemA1|3.5e-77|41.0|256/0|c.2.1.2|1/1|NAD(P)-binding Rossmann-fold domains| OP:NHOMO 4515 OP:NHOMOORG 889 OP:PATTERN --1----1111111---1------5--31325-1---------11-2---211-1-------1-3-11 37D2B--3448-3-EoX99-9V11Fd99999BVdieEUpj2O5e6853286-9792241177B174ABHB6-111----14-E1----1222-2111--2-8125G4A141111111-1-----2---211211-1988682229434572211111111-1112166472--11-----11-75534221A2A555555666665665B6664A5544AB8B933333326F411111-1--111--333332-7-22-2-----22131--2-1---111-2222--111111111112211221222212111---111-21345444323333351441342-31--1311142112-13-31112311514H66B-----74RDE234A8B875666556666B-78D57R7CBLD-NEE9DDDROOJKCG7A5B6EA39A756333333337DD82355111--111-----------------1111-4LK426CB9EPJKNNOA8788CCRP888757OCR9QJD-2ED993655C6B3HH2551222311111111--1B632922-11-1-2113-34419112244245A1---------------------1----1122424243431123232452112313231---13233------56463623331322243-3333332423333333333BCB42-155334444444454544634333331-4444444444441-12-----3443126A611111111111-2212222215243718969477E2657657591----1----1223222222213345635221113222--21224333--------1-2-------------------------21211-2-2-162 ----123---1--159B8588B4F6EA4434215564AA96AA342858699HD89865533--111--1--------------2--1-3A4B3513334111321-3-27161-3-11-112-1--21111-1111-1122-11-2-1-1--21-1251---11--223-2233222----124499O6831241112 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 263 STR:RPRED 100.0 SQ:SECSTR GGccTTcEEEETTTTcHHHHHHHHHHHHTTcEEEEEEcccHHHHHHHHHHHHTTccEEEEEccTTcHHHHHHHHHHHHHHHccccEEEEccccccccccGGGccHHHHHHHHHHHTHHHHHHHHHHHHccTTcEEEEEccGGGTcccccccHHHHHHHHHHHHHHHHHHHHHGGGTcEEEEEEEcccccHHHHHHHHGGGGcTTcTTccHHHHHHHHHHHccTTcccccHHHHHHHHHHHHcGGGTTccccEEEEcccccccc PSIPRED cccccccEEEEEccccHHHHHHHHHHHHcccEEEEEEccHHHHHHHHHHHHHcccEEEEEEcccccHHHHHHHHHHHHHHHccccEEEEccccccccccHHHccHHHHHHHHHHHcHHHHHHHHHHHHHHHHcccEEEEccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccEEEEEccccccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHccccccccccHHHHHHHHHHHHcHHHccccccEEEEcccEEccc //