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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD57088.1
DDBJ      :             putative short chain dehydrogenase
Swiss-Prot:             

Homologs  Archaea  52/68 : Bacteria  870/915 : Eukaryota  191/199 : Viruses  0/175   --->[See Alignment]
c.2.1
:275 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   4->271 2uvdA PDBj 3e-30 35.3 %
:RPS:PDB   5->262 1a27A PDBj 1e-37 24.0 %
:RPS:SCOP  9->273 1pwxA  c.2.1.2 * 2e-40 18.4 %
:HMM:SCOP  1->271 1zemA1 c.2.1.2 * 4.7e-80 43.6 %
:RPS:PFM   7->184 PF00106 * adh_short 3e-15 38.3 %
:HMM:PFM   7->185 PF00106 * adh_short 1.7e-38 33.1 166/167  
:BLT:SWISS 1->273 LIMC_RHOER 6e-75 51.1 %
:PROS 154->182|PS00061|ADH_SHORT
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD57088.1 GT:GENE BAD57088.1 GT:PRODUCT putative short chain dehydrogenase GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 2419666..2420493 GB:FROM 2419666 GB:TO 2420493 GB:DIRECTION + GB:PRODUCT putative short chain dehydrogenase GB:PROTEIN_ID BAD57088.1 LENGTH 275 SQ:AASEQ MGRVSGKVALVTGAARGIGRAQAVRLAQEGADIVALDLCGPVETVIIPPATRADLDETARAVEKTGARVVAATVDVRDGAALRAATDAAVAELGGLDIVCATAGITSSAPALELSEQAWQTMLDVNLTGVWQTCKAATPHLIERGGGAMILTSSIAGLRGLVGVAHYTAAKHGVVGLARSLAKELAPHHVRVNSVHPTNVDTPMIQNDMVRKVFRPDRENPTRAEFAEAAVSMNMLPIPWVDPLDIANASLFLASDEARYITAVALPIDAGSTQR GT:EXON 1|1-275:0| BL:SWS:NREP 1 BL:SWS:REP 1->273|LIMC_RHOER|6e-75|51.1|272/277| PROS 154->182|PS00061|ADH_SHORT|PDOC00060| SEG 65->91|tgarvvaatvdvrdgaalraatdaava| BL:PDB:NREP 1 BL:PDB:REP 4->271|2uvdA|3e-30|35.3|235/246| RP:PDB:NREP 1 RP:PDB:REP 5->262|1a27A|1e-37|24.0|250/285| RP:PFM:NREP 1 RP:PFM:REP 7->184|PF00106|3e-15|38.3|167/169|adh_short| HM:PFM:NREP 1 HM:PFM:REP 7->185|PF00106|1.7e-38|33.1|166/167|adh_short| GO:PFM:NREP 2 GO:PFM GO:0008152|"GO:metabolic process"|PF00106|IPR002198| GO:PFM GO:0016491|"GO:oxidoreductase activity"|PF00106|IPR002198| RP:SCP:NREP 1 RP:SCP:REP 9->273|1pwxA|2e-40|18.4|234/252|c.2.1.2| HM:SCP:REP 1->271|1zemA1|4.7e-80|43.6|257/0|c.2.1.2|1/1|NAD(P)-binding Rossmann-fold domains| OP:NHOMO 11954 OP:NHOMOORG 1113 OP:PATTERN 222123367575656315122--18557386A11---------21-43--522-23112132543-24 EBS3b1-555A352d*tRR-Ry33a*RQRRRR****e***4jB*KIB42B92PEI74811HIQ3IKVUVUD-111---1187T11112344412121--72F15BZ8N7A11111111111111273257112442EGGIJ222HA79DB3265511111523352BB8N4111122212112GC79A441G5LCCCCCCDECDECBCCHAIICHACB8EEIIB6666665BY6444443344444438778A71B17915-1-69556865777667654534443223333333333345555555555552221112225435784443333435645524645321177222B7113324333345513C2DdGGR11212E6zWY578QHMMGGHHGFFHFHHQ-GHMHDdEOPlX2laaNTVdvqknlPXCICLKSMDKNGBI66666666KOM859C8111111111112223312211211211119BlxE5FbUMTrfkoroONMNKcclhONNNAK*RwUzqZ47KIGD7EACODRCdX6974336A71111111143JA55K6A311111433213642C437398A9FN231211111111111111111131213558885CCB6F9367669589765684647461-2334711-111AA9B5C58997888888-9899878898978878879GLJ966998667778788777777O66644472189999999999911143423266563BEIB111716111111352DFGFF5B476E6MNIKFMKRHEEJFIJEI3121121111244A4444445467CAD9D9977864541123776577--------1-2--------1-1------1-------3232154565292 11--A8A-412-49BZaPPYQXNfYfYFHAFDEDGFBLGICHIEECLLNSQbqjNRHDIGFE977234151264622222464677-6-ATDaAMABB99B4CFDA-AD4xJUJGI993836C6LF5I4KjD-DBH8676G69K949845E32D5DBCOKKHBXKECB9EGCEHE3592Y222AJCONjQMA47H9A99 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 275 STR:RPRED 100.0 SQ:SECSTR GGccccEEEEEcccccHHHHHHHHHHHTcTTccEEEEEEcHHHTcEEEccGGGTHHHHHHHHHTTccTTcEEEEEccTTcHHHHHHHHHTcTTccccEEEEcccccccccGGGccHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTcEEEEEEEEGGGTcccTTcHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEccccccTTTTccccHHHHHHHccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccEEEcccEEEEccccccc DISOP:02AL 274-276| PSIPRED cccccccEEEEEccccHHHHHHHHHHHHcccEEEEEcccccHHHHHcccccHHHHHHHHHHHHHcccEEEEEEcccccHHHHHHHHHHHHHHHccccEEEEcccccccccHHHccHHHHHHHHHHHcHHHHHHHHHHHHHHHHccccEEEEEccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccEEEEEcccccccHHHHHHHHHHHHccccccHHHHHHHHHHHHccccccccccHHHHHHHHHHHHcHHHccccccEEEEccccccc //